RNA id: AMCG00017433


Basic Information

Item Value
RNA id AMCG00017433
length 2788
RNA type mRNA
GC content 0.49
exon number 8
gene id AMCG00017433
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4281484 ~ 4299779 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTGCGTCGGCACGGTGCGGATGGCCGAGGAGGCCGGGCCGCCGAGGCGCCGTGACGTCACGGGCGCTCATGTTTATGCAGCAGCAGGCGGCGACGTCGGGGAACTGGCTGCTTCTGGTTCCgacacaagaaaatacaaagcacagccggagaggagaggagaggagagcccGACACAAAGACCAGAGACGCTCAGACGCTTTATGCTCAAGACGATCGGAGCCAGTTTATCAATAACCGGTGGGACCGAGGAGCTGGTTGCATTGCAGAAGAAGAGTGTTGACGGCATGCAAAGTAGTGAAATATCTTCAGACAGCACTGATGATCCTCTTAGTAGTGGCCTACACCGAAATCGACAGCCTCGAATAGTAGTAATCGGTGCTGGCTTGGCTGGCCTCGCAGCTACTAAAACCCTCTTGGAAAACGGCTTTACGGATGTTACGATCCTAGAGGCATCAGACCGCATTGGAGGGAGAGTGCAAACCGTTCAGCTCGGACAAGCAACCTTGGAACTTGGAGCTACCTGGATTCACGGTGCCAATGGCAATCCAGTCTTTCATCTGGCAGAAGACAATGGCCTCCTTGAGCAAACCACTGATGGGGAGCGAAGCGTGGGCCGCATCAGCCTTTACACCAAGAACGGTGTTGCCCACTACCAAACCAACAATGGCAAGAGGATCCCCAAAGACCTCGTTGAGGAATTCAGCGATTTATACAACGAGGTCTACGAGCTGACTCAGGAGTTCTTCCAGAGCGGGAAACCAGTTGGTGCTGAGAGCCAGAACAGCGTTGGAATATTCACACGTGATGTGGTGCGCAAGCGAATCATGGTTGATCCGGATGACTCGGAGGTCACAAAGAAACTCAAGCTGTCCATGCTGCAGCAGTACTTAAAGGTGGAAAGTTGTGAGAGCAGCTCCCCCAGCATGGACGAGGTGTCATTGAGTGAGTTCGGGGAGTGGACCGAGATCCCGGGCGCCCACCACGTCATCCCCAGCGGCTTCATCAAGATTGTGCAGCTGCTGGCGCTGGGCATCCCAGAGTGTGTGGTGCAGCTCAACAAGCCCATCTGCTGCATGCACTGGAACCACTCGGTGCGCCAGGAGATCACGGACACCGAGGACCACAACAGTGACCACCGCGAGTCCTCCATCCGGGGGCACCAGGTGTACGTGGAGTGCGAGGACTGCGAGTTCATCCCAGCGGACCACGTCATTGTCACCGTCTCCCTGGGGGTCCTCAAGAAAAACCACGAGAGCCTGTTCTCGCCACCGCTCCCCGCAGACAAGGTGATGTCCATTGAAAAGCTGGGCATCAGCACCACCGACAAGATCTTCCTGGAGTTCGACGAGCCCTTCTGGAGCCCCGAGTGCAACAGCATCCAGTTCGTGTGGGAGGATGAGGCCCAGCTGGAGAACCTCACCTACCCAGAGGAGCTCTGGTACAAGAAGATCTGTAGCTTCGACGTGCTGTACCCACCTGAGCGCTACGGATACATGCTCAGCGGCTGGATTTGTGGAGACGAGGCCCTGGTGATGGAGAAGTACGATGACGAGACCGTGGCCGAGACCTGTACTGAGCTCCTGCGTAAATTTACAGGGAACCAAAACATTCCAAAACCTCGGAGGATCCTACGCTCCTCCTGGGGCAGTAACCCGTACATCTACGGGTCCTACTCCTACACTCGAGTTGGCTCCAGCGGGATCGATGTCGAGAAGCTAGCCATGCCGCTGCCTTACAACGAGAGCACAAAAGCGCCACCTCTGCAGGTGTTGTTTGCTGGAGAGGCCACCCACAGGAAATATTATTCCACCACCCATGGTGCTTTGCTGTCCGGTCAGAGGGAGGCAACTCGCCTCATTGAAATGTACCAGGACTTGTACAACGTAGTAACGGCAAAGCCTAAAATGTAAAGAAGAACCACTGACTAGTGATACAATTATCTGTTCATGCATCTTTTTAATTAGTAGGGCATCTAAAGAAAAGTAATCTTGTTTTTGACTGTATTTGAATATAGAGCTCTGTAGGATTTATTTTGAGATGTACTGTAAGGCAGAAAAAGGGTGCTCCTGCatctttgttttacattttcttgagacttttgttgaaataatacatttttaacatttctatatatttcttttattttttttgtaagtgccttctgtatttaattttgtgttacaaaaaatgaacaatgaatactaataaatcacattgtatTAAGGATGCAACACTCCATTCgtgtttttagtttagttagTTCATAAGATCCACCTTAATACACAAATTCATTGCCTCCTGGTATTCAACAGAAGACTTCTTGAGAATTGGCATTCTACTAGTACTTAAGGGGGATCTGGTTTGGTTTTGTGTCTTTACATGTTGCTGTAGTTTATGAGTAAGATATGTCAAGtttatcatataagcaacttttaagaCAGTATGTATgttatttcagtgtttcagtgtttcctAGATAGCAGAAACAcaatggaaaaactaaaaaagcacCACATTTGTCTTTCCCAAAGGAACCAGTCATTACATTCAGTGGTTCACATGTGTTGCTGTGTCAAGACTGAGTTATTATATTCTCCTTTCCAGCAACAGAGGAGATGAATGCACAGTGCAATCTGCAGCGGTTGTTTTGATCGGAGTGCATTCCAACATTCGCACCGATTGAATCATCCCACTCGCCTGCATTGATTTTGTATGAATAGGGTAATGCATGGGAACATGTGTTAGCTGTGTGCTTTTCAGGTGTTCGCAAGCTAAATACTAACT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K12259 SMOX, PAO5; spermine oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112594 lncRNA downstream 78677 4202607 ~ 4202807 (-) True G90307
TU112576 lncRNA downstream 239590 4041687 ~ 4041894 (-) True G90289
TU112574 lncRNA downstream 326348 3954888 ~ 3955136 (-) True G90287
TU112567 lncRNA downstream 596270 3672295 ~ 3685214 (-) True G90281
TU112539 lncRNA downstream 876718 3404486 ~ 3404766 (-) True G90255
TU112643 lncRNA upstream 47207 4346986 ~ 4347291 (-) True G90354
TU112644 lncRNA upstream 48315 4348094 ~ 4348312 (-) True G90355
TU112634 lncRNA upstream 84804 4384583 ~ 4390490 (-) True G90345
TU112709 lncRNA upstream 363057 4662836 ~ 4665167 (-) True G90411
TU112750 lncRNA upstream 629607 4929386 ~ 4937166 (-) True G90443
AMCG00017435 mRNA downstream 11398 4242448 ~ 4270086 (-) True AMCG00017435
AMCG00017436 mRNA downstream 77223 4203686 ~ 4204261 (-) True AMCG00017436
AMCG00017438 mRNA downstream 372272 3908513 ~ 3909212 (-) True AMCG00017438
AMCG00017437 mRNA downstream 372996 3907452 ~ 3908488 (-) True AMCG00017437
AMCG00017432 mRNA downstream 482012 3776494 ~ 3799472 (-) True AMCG00017432
AMCG00017442 mRNA upstream 111103 4410882 ~ 4439595 (-) True AMCG00017442
AMCG00017444 mRNA upstream 160740 4460519 ~ 4461277 (-) True AMCG00017444
AMCG00017440 mRNA upstream 210640 4510419 ~ 4512209 (-) True AMCG00017440
AMCG00017441 mRNA upstream 238192 4537971 ~ 4550882 (-) True AMCG00017441
AMCG00017443 mRNA upstream 259126 4558905 ~ 4584957 (-) True AMCG00017443
TU112472 other downstream 1665960 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 3929698 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 4175599 105685 ~ 105885 (-) True G89804
TU112697 other upstream 242996 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 858605 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 858605 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 922694 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 2087473 6387252 ~ 6389038 (-) True G90715

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000874 False 2220 mRNA 0.48 7 NC_007112.7 41849152 ~ 41865986 (+)
grasscarp (Ctenopharyngodon idella) CI01000049_09483465_09491174.mRNA True 2526 mRNA 0.47 6 CI01000049 9483333 ~ 9491945 (-)