RNA id: AMCG00017434


Basic Information

Item Value
RNA id AMCG00017434
length 258
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00017434
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 3737813 ~ 3747843 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCGTGCAGGAAAGGGTCTCCTTTTCTTTGTGCCTGATGATGAACAAGATAATTTTAGATCCACTGACCTTCAGTGAGGCCCGATTCAGGCCATCTCTGGAGGAGCGCTTGGAGAGCATCATCAGTGGAGCAGCGCTGATGGCAGACTCCTCATGCACGCGTGACGACCGGCGGGAGAGGATTGTGGCCGAGTGTAATGCTGTGCGACAGGCCCTGCAGGACCTGCTAAGCGAGTACATGAATAatTTTGTGTGA

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0045296 cadherin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112567 lncRNA downstream 52599 3672295 ~ 3685214 (-) True G90281
TU112539 lncRNA downstream 333047 3404486 ~ 3404766 (-) True G90255
TU112536 lncRNA downstream 382324 3355065 ~ 3355489 (-) True G90252
TU112528 lncRNA downstream 797670 2939935 ~ 2940143 (-) True G90244
TU112527 lncRNA downstream 798336 2939250 ~ 2939477 (-) True G90243
TU112574 lncRNA upstream 207045 3954888 ~ 3955136 (-) True G90287
TU112576 lncRNA upstream 293844 4041687 ~ 4041894 (-) True G90289
TU112594 lncRNA upstream 454764 4202607 ~ 4202807 (-) True G90307
TU112643 lncRNA upstream 599143 4346986 ~ 4347291 (-) True G90354
TU112644 lncRNA upstream 600251 4348094 ~ 4348312 (-) True G90355
AMCG00017431 mRNA downstream 198417 3529683 ~ 3539396 (-) True AMCG00017431
AMCG00017430 mRNA downstream 250288 3429621 ~ 3487525 (-) True AMCG00017430
AMCG00017425 mRNA downstream 650163 2841922 ~ 3087650 (-) True AMCG00017425
AMCG00017426 mRNA downstream 895919 2711302 ~ 2841894 (-) False AMCG00017426
AMCG00017418 mRNA downstream 1122251 2601783 ~ 2615562 (-) True AMCG00017418
AMCG00017432 mRNA upstream 28651 3776494 ~ 3799472 (-) True AMCG00017432
AMCG00017437 mRNA upstream 159609 3907452 ~ 3908488 (-) True AMCG00017437
AMCG00017438 mRNA upstream 160670 3908513 ~ 3909212 (-) True AMCG00017438
AMCG00017436 mRNA upstream 455843 4203686 ~ 4204261 (-) True AMCG00017436
AMCG00017435 mRNA upstream 494605 4242448 ~ 4270086 (-) True AMCG00017435
TU112472 other downstream 1122289 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 3386027 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 3631928 105685 ~ 105885 (-) True G89804
TU112697 other upstream 794932 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 1410541 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 1410541 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 1474630 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 2639409 6387252 ~ 6389038 (-) True G90715

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2567370 True 480 TUCP 0.57 4 NC_050571.1 4535841 ~ 4621990 (-)