RNA id: AMCG00017435


Basic Information

Item Value
RNA id AMCG00017435
length 2661
RNA type mRNA
GC content 0.44
exon number 20
gene id AMCG00017435
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4242448 ~ 4270086 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACCTGCTGTTGCAGATGGAAGGTGTTTTTCAAGCATTTCTACTTAGAATCTTATTATCCTGGACAGATGGATTAGATTTTGAATTGCTGATCTCAATGCCTGCCAGATCATCTCCATTCATAATGGGAAGAATTGGAGCTGGTGCCTTAATTGCCATCGATGAAGTAAACAGGAGCCCTAGCCTATTAAAAGAGGACTACCTGGAGGACCCCGCAGTTGTAGGCTTTACAGAGGAGTGGTGGGGCGGCCCAAGAGAGCGCCCCGCCCCCTCTGTGCTTAGAATCTGTGAAAACTTTGGCTGGAGACGCATTGGCATCATCTATGAAAACAAGGCCACCTGGACAATCCCGGCAGAAGGGATTAAATTTGCTGCTGAGCAACACAACATTACAGTGGCAATTTATAGAGATATTCATGGCTACAACACCTCTTTTACATCAAAAAGAGTTATTGAGGAAGTGACTGCTGTGTCACGCAtAATTGTAATATCAGCGAAAGGAGAAGCAGTGAGAGAATTGCTAATTGAAGCCCACAAACAAGGTTTAATCAATGGagagtttgtatttttctgctttGAGCCTTATGAACAGAAAGTAATGTTCGGTGTTTTTCACTGGAAAAGAGGAGATGCTCATGATACAGTAGCAAGAGAAGCATATCAAGCTCTGTTTCTGCTGTCCCTGTATAAACCCCACAATGAAGAGTACATGAACTTTTCAGCTGAGGTCATACGAAGATCTAAAGAAGATTTTGGATACACTTATGCACCGGATGAAACGGTTTCTGTTCTGACTGCAATTTCCCATGATTCTGTGTGGCTGTATGCACAGGCATTAAACGAAACCCTGTCTGAAAACGGTGATCCATATAATGGGTCTGCCATTACGCGTAAAATGTGGAATAGAACAATCACAGGGATTCAGGGTGAAGTTACAATAGATAACAATGGAGACCGTGAATCTGCATACACGATGTATCAcatacaacacaataaaaatggCACATTTGAGGCTATAGCAAATTATCTTGGAACACAGAAAACCTATGTGCAAGTTCCAGGACTCAGCATTGTTTGGCCTGGAGGAAGGACTACTGCCCCACTTGACAGTCCTgaAAACACCTGTTCTGTGCGCTTCCTGCATGCAAAAACTGTTAATCTCAATAAGGAATTACTTTCTGAGCTGAAGCAGTGCAGAGATTTGAACCATCCCAACATATGCAGCTTCATTGGTGCCTGTATAGATCCACCTCACCTCTGCCTGCTGACCGAATATTGCCCCAAAGGGAGTTTGCAGGTGCTGTTTCTGACAttgacagtgttttatttaaggtGCATCTcctctttcagttttgtttgcataatcaaattaaatgtttactggTTTTCACAGGATATTTTGAAGAATGATTCCATAAAGCTTGACTGGACCtttaaatattctttaatgttggACATAGTGAAGGGAATGGACTATCTTCACAAGAGTCCTCTAAGGTCACATGGACACCTTTCATCTACAAACTGTGTGGTAGACAGCAGGTTTGTATTAAAGATCACAGACTTTGGACTGAGCAACCTCAGACGGCCCAATGCTGTTGACGTCCAAAGCAGTCTTGAACACTGGCAGCGTTTACTGTGGAGAGCACCTGAGCTGTTAAGGGACAACATGCCTCCTAATGGAACACAAAAAGGAGATGTTTACAGTTTTGGCATCATAGTCCATGAGATTGTGTATCGCAGTGATGTGTTTTTCATCCCACATTGCACCCCGAGTATAAAGGAGATTATAGCGGAGGTGAAGGCGGGAGGTTGCATTCCCCTCCGGCCCCATTGTGGCACAGCGGAGTGCCCTGAGAATGTGGAGATGCTGATGAAGagctgctggagagagagaccttCAGAGAGACCAGACTTTGTGTCCTTGAAAGTAGTAGTGAAGAAGTTAAGCCCTTCCACGGGGGGGGACAACATTCTTGACAACTTGTTGTCCCGCATGGAGCACTATGCCAAAAACCTGGAGGAGATTGTGAATGAGCGCACCGCCCAGCtcctggaagaaaaaaagaaggcaGAAAGTCTGTTAACTCAGATGTTGCCAAGATCTGTAGCCATCCAGCTGATAGCTGGGGAGACAGTGCAAGCAGAAACATACGACTGTGTGACTATCTATTTCAGTGACATAGTGGATTTTACTGCAATGTCTGCATGCATCACCCCAATGCAGGTTGTTGACTTGCTTAATGACTTGTACACATACTTTGACAATATAATCGACAACCATGATGTTTACAAGGTGGAAACCATAGGTGATGCCTATATGGTGGTATCTGGGCTGCCTATTAGAAATGGGGATGACCATGCAAAAGAAATAGCCAGGATGTCCTTGTCAATACTGCAAGCTATGAGAAAATTTGAAAACAGACATGTCCCAGGTCAGCAGCTAAAGGTCAGAATAGGACTCCATTCAGGCCCCTGTGTAGCAGGCGTTGTAGGGTTGAAAATGCCTCGGTATTGTCTGTTTGGAGACACAGTTAACACTGCCTCACGTATGGAGTCCTATGGTTCACCTCTCAAGATTCACATCAGCAGCTTGACCAAAGAACTGCTAgataaatttaaaacattcaaatgtgaGCAACGAGGAGATATTCATATGAAG

Function

GO: NA

KEGG:

id description
K12323 ANPRA, NPR1; atrial natriuretic peptide receptor A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112594 lncRNA downstream 39641 4202607 ~ 4202807 (-) True G90307
TU112576 lncRNA downstream 200554 4041687 ~ 4041894 (-) True G90289
TU112574 lncRNA downstream 287312 3954888 ~ 3955136 (-) True G90287
TU112567 lncRNA downstream 557234 3672295 ~ 3685214 (-) True G90281
TU112539 lncRNA downstream 837682 3404486 ~ 3404766 (-) True G90255
TU112643 lncRNA upstream 76900 4346986 ~ 4347291 (-) True G90354
TU112644 lncRNA upstream 78008 4348094 ~ 4348312 (-) True G90355
TU112634 lncRNA upstream 114497 4384583 ~ 4390490 (-) True G90345
TU112709 lncRNA upstream 392750 4662836 ~ 4665167 (-) True G90411
TU112750 lncRNA upstream 659300 4929386 ~ 4937166 (-) True G90443
AMCG00017436 mRNA downstream 38187 4203686 ~ 4204261 (-) True AMCG00017436
AMCG00017438 mRNA downstream 333236 3908513 ~ 3909212 (-) True AMCG00017438
AMCG00017437 mRNA downstream 333960 3907452 ~ 3908488 (-) True AMCG00017437
AMCG00017432 mRNA downstream 442976 3776494 ~ 3799472 (-) True AMCG00017432
AMCG00017434 mRNA downstream 494605 3737813 ~ 3747843 (-) True AMCG00017434
AMCG00017433 mRNA upstream 11398 4281484 ~ 4299779 (-) True AMCG00017433
AMCG00017442 mRNA upstream 140796 4410882 ~ 4439595 (-) True AMCG00017442
AMCG00017444 mRNA upstream 190433 4460519 ~ 4461277 (-) True AMCG00017444
AMCG00017440 mRNA upstream 240333 4510419 ~ 4512209 (-) True AMCG00017440
AMCG00017441 mRNA upstream 267885 4537971 ~ 4550882 (-) True AMCG00017441
TU112472 other downstream 1626924 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 3890662 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 4136563 105685 ~ 105885 (-) True G89804
TU112697 other upstream 272689 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 888298 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 888298 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 952387 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 2117166 6387252 ~ 6389038 (-) True G90715

Expression Profile