RNA id: AMCG00017436


Basic Information

Item Value
RNA id AMCG00017436
length 576
RNA type mRNA
GC content 0.45
exon number 1
gene id AMCG00017436
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4203686 ~ 4204261 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTGGACTTCATAAACTTGGCATCGAGCCTAAACTGCCCCATGATGTATGCTACTTCTTGGTCAACCAGGTCTATGCTATCACTGCTTCCTTCGTGGCCTTTTACCTGCCCATGTTCATCATGCTGGTCGCCTACTGGAAGATCTACAAAGCAGCGAAAAGACAAGCCATGCAAATCAATGCAGTTGAGAACCAGATGACCATACACAATGTAGACGTTGACCCCTCCAAGAAACAGAAGCAAAGAAATTCCATGAAACGGGAGAGGAAAGCAGCTAAAACCCTTGGTATAATCATGGgagtttttctccttttctggTTGCCCTTCTTCACAACAAACATCATTGACCCATTTATAGAGTACCAAACAGACATGGTGATCTGGGATGTGTTCCTGTGGCTCGGTTATGTGAATTCCTCCTTGAACCCGTTCCTGTATGGCTTCTTCAACAGGTCCTTCAGACGGGCATTTTTCATGATAATTGGATGTAAGATTTGCTTACCTGGTTCTCCACCCAGCATTGACCTTTCTAATACCAGGAGGGATGGTAATGAACGGACAGCCAACCAATGA

Function

GO:

id name namespace
GO:0007210 serotonin receptor signaling pathway biological_process
GO:0032098 regulation of appetite biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0001594 trace-amine receptor activity molecular_function
GO:0004993 G protein-coupled serotonin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112594 lncRNA downstream 879 4202607 ~ 4202807 (-) True G90307
TU112576 lncRNA downstream 161792 4041687 ~ 4041894 (-) True G90289
TU112574 lncRNA downstream 248550 3954888 ~ 3955136 (-) True G90287
TU112567 lncRNA downstream 518472 3672295 ~ 3685214 (-) True G90281
TU112539 lncRNA downstream 798920 3404486 ~ 3404766 (-) True G90255
TU112643 lncRNA upstream 142725 4346986 ~ 4347291 (-) True G90354
TU112644 lncRNA upstream 143833 4348094 ~ 4348312 (-) True G90355
TU112634 lncRNA upstream 180322 4384583 ~ 4390490 (-) True G90345
TU112709 lncRNA upstream 458575 4662836 ~ 4665167 (-) True G90411
TU112750 lncRNA upstream 725125 4929386 ~ 4937166 (-) True G90443
AMCG00017438 mRNA downstream 294474 3908513 ~ 3909212 (-) True AMCG00017438
AMCG00017437 mRNA downstream 295198 3907452 ~ 3908488 (-) True AMCG00017437
AMCG00017432 mRNA downstream 404214 3776494 ~ 3799472 (-) True AMCG00017432
AMCG00017434 mRNA downstream 455843 3737813 ~ 3747843 (-) True AMCG00017434
AMCG00017431 mRNA downstream 664290 3529683 ~ 3539396 (-) True AMCG00017431
AMCG00017435 mRNA upstream 38187 4242448 ~ 4270086 (-) True AMCG00017435
AMCG00017433 mRNA upstream 77223 4281484 ~ 4299779 (-) True AMCG00017433
AMCG00017442 mRNA upstream 206621 4410882 ~ 4439595 (-) True AMCG00017442
AMCG00017444 mRNA upstream 256258 4460519 ~ 4461277 (-) True AMCG00017444
AMCG00017440 mRNA upstream 306158 4510419 ~ 4512209 (-) True AMCG00017440
TU112472 other downstream 1588162 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 3851900 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 4097801 105685 ~ 105885 (-) True G89804
TU112697 other upstream 338514 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 954123 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 954123 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 1018212 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 2182991 6387252 ~ 6389038 (-) True G90715

Expression Profile