RNA id: AMCG00017437


Basic Information

Item Value
RNA id AMCG00017437
length 873
RNA type mRNA
GC content 0.48
exon number 2
gene id AMCG00017437
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 3907452 ~ 3908488 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAGAACTATGCCCGGAGTCTCTGTTCGTCCACTGTGCCAACCACTCACTTGACTTAGTTCTTCAAGAGGCCGCCTGTGAGCGTGTATGTAGGGCCTACAGAGAAATCATTGGAACTATGGAGCAGCTTAAAGATGACAAAGGTGTGAGGGGAGACGCTACAGCTAAGATCGGAGGCCTGTATAAGCAAGCAATGAAAGCTAAAACCTACTTTGGCCTCCTGTGTAGCGAAGCACTTTTCGAGCCGTGCGAGTCGGTGGCCAGGAGTTTACAGAACCCCAAAGCCAGCGCACTGGGTGCCCTTAAGTGTACCGAATTTCTTAGAAAGTGCATGGAAGCACTTCGAAATGATGCAGTGGTGGAGAACATACTACACATGGTATCCACAGCGGGACTGAAAATGCCAGGTGATGCTGAGTTGCACAGGATGACAAAAATCCCAGTCCCTTATCGGCACACAACAGAGCCAGAGGCAGAAGTGCAACACCCACGGCGACACAAGTTTTTTGAAGCATTGGACTTGGTCACAGAGGAACTAAAGAGGAGGTTCGATCAAGATGACATGAAAACAGCAGTTCTCAGAGAGAAGGTGGTTAATACGGCAGCCAACAAGGAACAAACAGTGAATGTAGATTCCCTTCACCTTCCCTTGCACTTTGACGGAGCCCGACTGGAGATCCAGCTGAAAATGCTCGGAGACATCTTCAGCGATTCTCCTTGTAACACCGTAAAAGACATAGCCGCAAGTCTAAGCTCCATCCACAAACTAGGGCTATTTTCAAAGAAGCTAAAAACCTCATTAAACTATGCCTATGTCTCCCCATCTCAGTTGCTTCATCTGAGAGAACATTTTCCACTCTGCGCCGTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112567 lncRNA downstream 222238 3672295 ~ 3685214 (-) True G90281
TU112539 lncRNA downstream 502686 3404486 ~ 3404766 (-) True G90255
TU112536 lncRNA downstream 551963 3355065 ~ 3355489 (-) True G90252
TU112528 lncRNA downstream 967309 2939935 ~ 2940143 (-) True G90244
TU112527 lncRNA downstream 967975 2939250 ~ 2939477 (-) True G90243
TU112574 lncRNA upstream 46400 3954888 ~ 3955136 (-) True G90287
TU112576 lncRNA upstream 133199 4041687 ~ 4041894 (-) True G90289
TU112594 lncRNA upstream 294119 4202607 ~ 4202807 (-) True G90307
TU112643 lncRNA upstream 438498 4346986 ~ 4347291 (-) True G90354
TU112644 lncRNA upstream 439606 4348094 ~ 4348312 (-) True G90355
AMCG00017432 mRNA downstream 107980 3776494 ~ 3799472 (-) True AMCG00017432
AMCG00017434 mRNA downstream 159609 3737813 ~ 3747843 (-) True AMCG00017434
AMCG00017431 mRNA downstream 368056 3529683 ~ 3539396 (-) True AMCG00017431
AMCG00017430 mRNA downstream 419927 3429621 ~ 3487525 (-) True AMCG00017430
AMCG00017425 mRNA downstream 819802 2841922 ~ 3087650 (-) True AMCG00017425
AMCG00017438 mRNA upstream 25 3908513 ~ 3909212 (-) True AMCG00017438
AMCG00017436 mRNA upstream 295198 4203686 ~ 4204261 (-) True AMCG00017436
AMCG00017435 mRNA upstream 333960 4242448 ~ 4270086 (-) True AMCG00017435
AMCG00017433 mRNA upstream 372996 4281484 ~ 4299779 (-) True AMCG00017433
AMCG00017442 mRNA upstream 502394 4410882 ~ 4439595 (-) True AMCG00017442
TU112472 other downstream 1291928 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 3555666 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 3801567 105685 ~ 105885 (-) True G89804
TU112697 other upstream 634287 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 1249896 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 1249896 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 1313985 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 2478764 6387252 ~ 6389038 (-) True G90715

Expression Profile