RNA id: AMCG00017440


Basic Information

Item Value
RNA id AMCG00017440
length 1503
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00017440
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4510419 ~ 4512209 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCAATAACATGGATTTAAGCTCGCAGGATTCGTTTTATTCTCAATACGACAATTGTTGCAGCACTTCCCCTGCAATTGAGACGGTCGGGCCAGAAACAAGTCAGGATATGATCACAGAGGCGCATAAGGAATCACCTGTTCACTTCACTCAAGgtGCAACTATGGAGCCCAAAACTGAACCCTCAAACTCGGATTTCTTCTTTGACCCCAGTGAAGGGTCTAACAGCGGTTTCCCCTCTTCCCTTGCCTACTCGGGCAGCTTCTATGTGGAGACCTCCCAGGGGGCCCCGATCAGCACCGAGACGCTGCTGAACATGATCACAGAGATCGTTGGGATTTCTACTCTACCCATCTCCGAAATGCAACAGAGTCAACATGAGACGGTGCTTTCTTCACCTTCTCAATTGCATGACAATCACGGCTTTTCTGGTGCTGGTTTCCAATGCCAGACACCCATCTGCCCTACCAGTAGTGCATCTCCGCCGCTGTACTCGCAATCCCAAATGTGCTCAAGCTACCCAAACCTTCAGGCAAGTCTGCAGGTCCAGGATTCTTCTATGGCTGAAGCTAACTTTGTTGTTCCAGCTCAGGATTTACACCAGAAGCCATTGGAGCCACAGCCAGGGGTGACCACCTTCCCCGTTGTTGTCAAAAGTGAATTCGAGAGCAGCTGCTATGAGTGGGACCCCTTCAGTAAAACCGAGTCGTATCTTTCCACAAATTACGGGTCAGAAATGTTTCCTATAGCGGGCGATTGCTCCCCTGATCAACAAGTGGATTCAAAAGATTTCCTCGACTCCTTTTCCCCTGCTTGTCATAGCTCTGAACTCGGGTGCAAATTGGATACTCCGCTCAAACAGGAGCAGTGCTTTATTGATAACAACCAACAGAGTTTCCAGAGCCATGTGTTCGGCAACTATCAAGTGCAGACCATGGGTGTATCTAACAACGCCAGCAGTGTTTTGAAACCAAGTGTATTCCCCAATGCTGGGATCCAAACTTTAACAAGCCAATGTGATTTAGCTTACACCACCTCCACGCTCTCCAGCGCCATAGATTCACTCCTGTATCCATCCTTAGTCCCGGACACCTATGCTAGAAACAGTATCCAGGTGGAAAAAGCCCCACGAGTCAGGAAAAGCACACCTCGTACCAACGGGCCACCCAAGGAAAAGCCTTTCTCCTGCCCAATGGAAAACTGCGAGAGGCGTTTTTCCAGATCCGACGAGCTTAACCGACACCTCCGCATCCACACAGGACACAAACCGTTCCAGTGTCGCATCTGTTTGAGAAGCTTCAGCCGGAGTGACCACCTGACCACTCACACCCGGACTCACACCGGAGAGAAACCGTTTTCCTGCGACGTGTGCGGCAGGAGGTTTGCCAGGAGTGACGAGAGGAAAAGACACGGACGTGTGCACCTGAAACAGAAGGAGAAGATGGAGCTCAAACCTCAAATACTGTCAGCCTGCTCCTTTTCATTGCCTGAAGGAATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112634 lncRNA downstream 119929 4384583 ~ 4390490 (-) True G90345
TU112644 lncRNA downstream 162107 4348094 ~ 4348312 (-) True G90355
TU112643 lncRNA downstream 163128 4346986 ~ 4347291 (-) True G90354
TU112594 lncRNA downstream 307612 4202607 ~ 4202807 (-) True G90307
TU112576 lncRNA downstream 468525 4041687 ~ 4041894 (-) True G90289
TU112709 lncRNA upstream 150627 4662836 ~ 4665167 (-) True G90411
TU112750 lncRNA upstream 417177 4929386 ~ 4937166 (-) True G90443
TU112856 lncRNA upstream 743880 5256089 ~ 5256406 (-) True G90520
TU112880 lncRNA upstream 843053 5355262 ~ 5356316 (-) True G90540
TU113031 lncRNA upstream 1164690 5676899 ~ 5677249 (-) True G90648
AMCG00017444 mRNA downstream 49142 4460519 ~ 4461277 (-) True AMCG00017444
AMCG00017442 mRNA downstream 70824 4410882 ~ 4439595 (-) True AMCG00017442
AMCG00017433 mRNA downstream 210640 4281484 ~ 4299779 (-) True AMCG00017433
AMCG00017435 mRNA downstream 240333 4242448 ~ 4270086 (-) True AMCG00017435
AMCG00017436 mRNA downstream 306158 4203686 ~ 4204261 (-) True AMCG00017436
AMCG00017441 mRNA upstream 25762 4537971 ~ 4550882 (-) True AMCG00017441
AMCG00017443 mRNA upstream 46696 4558905 ~ 4584957 (-) True AMCG00017443
AMCG00017447 mRNA upstream 89295 4601504 ~ 4620068 (-) True AMCG00017447
AMCG00017448 mRNA upstream 131487 4643696 ~ 4661158 (-) True AMCG00017448
AMCG00017453 mRNA upstream 179924 4692133 ~ 4861977 (-) True AMCG00017453
TU112472 other downstream 1894895 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 4158633 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 4404534 105685 ~ 105885 (-) True G89804
TU112697 other upstream 30566 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 646175 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 646175 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 710264 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 1875043 6387252 ~ 6389038 (-) True G90715

Expression Profile