RNA id: AMCG00017447


Basic Information

Item Value
RNA id AMCG00017447
length 5639
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00017447
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4601504 ~ 4620068 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAAATGGCGGACGGGTCGGCTTCGGatctggagagagggagacatgGGGGCTTAAAGAAATAATatcctgcatttatttatttttttcagtttttgtcaaCTCTGTTGTCTTCGCCATGGACCCAGAGAAGAACCTGACGTTCTGCTTAGGGCTGAATGCGGTGGAGATGACAATATCCCTGCGGGACCCCGATATTGCAATTACTAAGATGACAGTATCCCCGCAGGACCCTGATCTTGCAACCATTAACAAGGGTGTGGAGTACCAGGGCAGTGGTAGCCAACCCATCATTGCTAGCCCCAAGTACTGCCCTGGAGTCAACAACAACGCGGGCTATCTGTGCGAGACCGGCCACTGCTGTGGGGAGACGGGCTGCTGCACCTACTACTACGAGCTTTGGTGGTTCTGGCTGCTCTGGACCGTTCTCATCTTATTCAGCTGCTGCTGTGCATATCGACACCGCCGGGCAAAACTGCGCATCCAGCAGCAACAGCGACAGAGAGAGATCAATCTTATTGCTTACCACGGGGCCTGCAACTACCCTGCCTCCATGCTGGACCTAAGTTTCCTGGCCTCGTTTAAGCTGCCGTCCTATGAGGAGGTTGCAGCTCGCCCCAACACACCGCCACCTCCCTACAGCACGGTGTTTGCCCTGCAGGGGGGGCAGTATGCACATGCAGGGCCCAGTGGCATGACCTCCTCACAGAGCTCTGACAACTACACCAGCTGCTCCTGCGAGTCCTGCTCCGCCTCTTCCCCCAGCAGCACCTCCTTCTCCGTGCAGGTTACTGACGAGACCGACACCAGCAATGCCACAACGCCCAGCGAAGCAGGAGACTCCCGGCCGCCCAGTGtagccaccaccaccaccaccgccgCCATTGCCCTGTCTCCTACCACCCCTGCCGCAGATCTCACTGACCCTCTGGGGGCCTCCACGCTGGCTGAACTGCCGGACAAGGCGCCGAGCGAGGAGACCAGCAAGGAACCCCAATCCCTGAAACCAGCTCAGTCTCCCCCCAAGCATGCCCTCTTCTCCTCCAATGTGGACTTCTTCGAGCCGGAGTGCCATGTGTGCTGTGGCTCGGACATCGAAGGGGACGAAGACGCCGACGAGAGTCACTTCCGACACCGTAGGCTCACCGGGGACTCGGGCATCGAGGTGTGCCGCTGCCAGGTGGAGAGTGACGAGGAGGAGGCCGAGGAGcgggaggagacggaggggaaGGAGGCTGCCGGTTTCCTGCACGACAGCGTGGACTGTTCAAACAGAGCCCAGGCCACCCAAGCACAGCAAAATTGCCAGACCAGCAGCACGGCACCAGAGGAGTGTGCCAGTCTGTGTACCCCTGCCACAACTCTGCAGCTCAGTGGGGAGTCGGTGATCACTGTGGAGTCTGTGTGAAGTAAGAGTTGGCTGGGCTGAGCTAATCAGCCTGAAGggagataaaataaatggaaaaataacaaaaaaatgcaacatgaaTGTAGTCCAAGGCGAGGGGAAATAAATGTAAGCCCTGGTGTGGCCTGCAGGGGGGGGAAGGCAAACAAAAGCAGCCCTGCACCGTGTGCCATTGTAATTCACACGTCAATAATGAGTAACGATCCAACAATATGCACACAAAAGGAAGTTACCTGTGCTATCTAACCGGTGTGcattcaaaagcaaaatcagAAATAAGGCAAGGGGATCAAGCAACTGAAAATAAACGTGCGCCTTTTCTGgttcatttccatttgtgtatGGAGAAACAGTGTGTACAACAAAGAACAAAGGGGGTTTCAAGACCAGAAACAAAGCCGCAATGAAATGCAGCTCTTTTCTCCTAAGCTGTCCAAAGTCACACAAAGAATAATACCAGCTGAAGTCAGCATAATTTTTATACCTCCCTTTTGTTAATTCAGCTGCTCACGCATTGCTGTTCGTCCCCTTGTGTTTCTAAAAGATGTGCACTGATCTTCCTCTCTCATCCGAGCGGCGCGATTCTGCTCCTCGTCAGCAGCGGTTCTTATAATTGCTGCTTGTCTGTAACCAGCCTGGTGTAACATGAACCCACTTAGAGACTTGCATTGTTGCTCTGTAGATTACTAATGCTGCTTGAACTGCTCATCAATTCAAAGGCAATAATACGTTTGGTCCTGCCCCATAGTTTAGTGAAACTGGGGATGGGCACTGGGATTGGGGCCGTTCTTGGAAAACGTAATAACAAAGATttgaatacaacaaaaaaacatccccCCGAAAAAATAATTCCTGAATTTTCCAGAGTTCAGATGTGGAGGAACAAAGCCGAAAGGTTCTTGACAGACTTCCTTTTAGACGGACTGTTTATTTTGATGAAATGCAGGTGTGTTGAGCTTACGttcaacacacacaaatcccaGCACCATGGAGCAGTGACTAGACTGCAGCCTCACACAGGGATACTGGGAGACACCTGTCCAAAGCCACTGTTCCTCAACAGAGATGTATGATTGTAACGCTTCCTCGTCGGATTTCAAAGCTTATTTAAACCCGGAAGACAATAAGGCAGGGATAAGTACGAAGCATCTGTAAGTGTGGCCTTGCACACAGAATGCCACCTGAACTTGGTTAGATGATCCTGGCTGGTCAAATAAGCTGTGAAAGATGCACACACTACCAGGGCATTCTCTGGGTGTGAGTTATATTCGGAGTAAGTTATTCTAACCAGCAGCaggatttgattgttttctaaTAATAACATGTTGAATGCTATTGTCGATGTATAACATGAGCCAAAGCATTCTTCCTATGAAAATACACCTAGGAGAAAAAGCGCATGcagctaaaatatatataaatctatattgaggcattcattaaaattagttaggttttttttgtttgtttttttccttttaagttGCATGCATTGTCTGATATAACCACAGTACCCCAGAAATAGTTGATTTGTTTGattcaacataaaatataaaaatgcacattttatttttaagttttttcagttttttgccattttgtttattcCCGTTTTCcctaataatacaataaataaaatgtgcaatgtGAAGGTTTCGTGGGAATGTGACAGGAAGGTTTATGTCAATGAGCCTGTGgtttaaaagtgaaaaacaaacactcaacACCAACAAGAACTCTTTCTTTAATATTTCCAAGTTTAGGTTTGTCATTTTGtcctgtattgttttaattactaccacagtttttttctcaaaaagCCATGGAGGCATTCCTCTATTAAATGTCTGCAggactgatttttatttatttgtttatttatttatttaccccacagacacacacacacgctcacaatTGACAGGAAAGCTGTTGTTTCGGCAGGGTGCTCAGTCGACTAAGCCCAGGCTCTGTGGGGCTGCCTGCCACTTCTCTGCCAATGTTAGCTAGCTCTTGGCTCTTAGACCAGATAGCAAATATGTAACCCATCAGTAGCCAATTTGTAAAGCCTGATTGCTGTGCAGGTGCTCAACATAGTCCAGTGTGAGGACTGCTGCTGACTGGCCTGAATGTCTTCTGTTCGTTATTGAAATTAACCAATGACTAACACCTCACATGACTTGTTGTAAGCCTTTGTAAAGGACTTGCCTCTCGCCTTTACTTGTAGAGACTGTTCTCTTTTCATGCACATTCCACTGCCCCTATGTTAAGACACTACCACAGGGCTAGATTTGTAAAGCTTTGTTTGGCTTTGGGTGCAAGCCTGTAAGACTTATATATAATTCAGTTTGACCACTTGCATAGTCTTGTCTTACTTTAGAAATCATGGTCGTAAGATAGACTGCAGATATGTACTATTTAGCATTTAGGTAAATAAAGCAAAACGAAAAATGGCAGCAACATTCAAATCCAGAGAGTTTATTTGTATATCCATGCAGGTTTGAAAGAAATGACTTGCATTGCGGGGGAATAAATGCTTTCTTGTGGAATGAAAACCTTTATAGCCTACATGTGGTCAGCCTATACTGTGTTTAACGATGACACGACAATTACACTGtctgaagtttattttaaagtttaggAAAACTTACCATTAAATTAGAAGTCTTCAGTGCTGATCCATCGGTTCTTTGGAAATACAGTGCGATGAACATGCTTCGCTGTAAAAGCAAAGAACCCATTGTCTGGTTCTACGCACAAGATCCTGTCTAAACAATGTGCATGTAATGGCATTGAAAATCCTCATTTGcacattgtaaaaaatgtatgccAGGACAGAGCTTCCTATTGACCAAGACGATCGAATGGTGCTGCCTTGAGACTGTCACAGGATTGGTCATCACTGGCACCAGTGTGGATTGGCATTATGAAAGCCTAGGAAATCGCGTGACACAAGGCTGTTATTTCACCCTTGTTGTTTCATGTCTATCGCAGCATCAGATGTCAAGTTCTGATTAAAACGCATCTATTGTGCCCTTCACCCTCAACATACGTTAAAAGGAACTCGCTAGTGATTACGCTTGATGTACATTTCAAGAGTTTCACaagaattattttaactttCCCAAAAGCAACATGCATGCCATTATACCTCAGCTTCGCCGATTATTCCACAAGAAAGATTAAACCATTCATCACAAGAAGTTCAGGTTTGTAATTTATGCATTCcacttttttcctgtttaaaaacaCGAAACAATGAAAAAACTGGTTGTGTGgtcaatatttgtattgtatttataacacaCAAGCCTTTAAATGTCATGTCTgtgttctgtatgttttttcttataTAGTTAACTTTTTCTATTAAGCCGTTAAGGTGCACACCAGCCATTTCTGATTGGGCAGGGTATTACACTAGTCTAACACTTAGTTAATGGTTTAGTTTGAATTTCTATGGGTATGCTGTGGATTCATATACAGGAACaacccttcacacacacaatacacacatgaATACCTATCTATATGTATAAGAATCCTCCTTGTTAGATTAAGTTCAACTGTGCCATTTTAAAAGCTAATGTTATTTCTTTGAAACTGATTCAGAGATGGTGTTTCTTTTGCAAGAGCTCTGCCAAGGAACTTTCAGCGTATTCTCATTTTGGTGTCCTTCTGTTTGTTAGGCTTCTGTTAATCTTTTGCCTGGTCTAGTTATGTTGCTGTGTAATTACCAGCCTACATACTGGACATACAATAGTGAGACCTTAAAACCCTGTTTAGTGACCACTTAATATGCAAAATGGAAGATtatagaatgtatttaaaaccaacatctaatatgttttaaatgagtgGTGTGTTCTTTGGCTATTGTGGTTCATGTGTGTAACTAGCCTTGTAAATCCTCATGTACATGTGAGGGGGTTTTAGGCAGAAAGCAAAATGGATACTAGTAGACTGTTGCCTTTTATAATGCTACAATTGTTTAAGTGTAAAACAGTAATTTCCATTTTTGGTTTTACCATGGTGTGCCACTTGTCTTTTTCCATATGTATGTTCTATGTTTTCATACCTTCATATTAATGATCAAAGCTGAACACATGGATTCACCCTTGTTTTATTCCCTAAATCATTTTGcagattgttgttttgtttgagcggaaacaaaaaagaaattcaAATAGGAactacttttaaaacaaattatatatatatatatatatat

Function

GO: NA

KEGG:

id description
K24775 WBP1; WW domain-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112634 lncRNA downstream 211014 4384583 ~ 4390490 (-) True G90345
TU112644 lncRNA downstream 253192 4348094 ~ 4348312 (-) True G90355
TU112643 lncRNA downstream 254213 4346986 ~ 4347291 (-) True G90354
TU112594 lncRNA downstream 398697 4202607 ~ 4202807 (-) True G90307
TU112576 lncRNA downstream 559610 4041687 ~ 4041894 (-) True G90289
TU112709 lncRNA upstream 42768 4662836 ~ 4665167 (-) True G90411
TU112750 lncRNA upstream 309318 4929386 ~ 4937166 (-) True G90443
TU112856 lncRNA upstream 636021 5256089 ~ 5256406 (-) True G90520
TU112880 lncRNA upstream 735194 5355262 ~ 5356316 (-) True G90540
TU113031 lncRNA upstream 1056831 5676899 ~ 5677249 (-) True G90648
AMCG00017443 mRNA downstream 16547 4558905 ~ 4584957 (-) True AMCG00017443
AMCG00017441 mRNA downstream 50622 4537971 ~ 4550882 (-) True AMCG00017441
AMCG00017440 mRNA downstream 89295 4510419 ~ 4512209 (-) True AMCG00017440
AMCG00017444 mRNA downstream 140227 4460519 ~ 4461277 (-) True AMCG00017444
AMCG00017442 mRNA downstream 161909 4410882 ~ 4439595 (-) True AMCG00017442
AMCG00017448 mRNA upstream 23628 4643696 ~ 4661158 (-) True AMCG00017448
AMCG00017453 mRNA upstream 72065 4692133 ~ 4861977 (-) True AMCG00017453
AMCG00017452 mRNA upstream 256443 4876511 ~ 4884349 (-) True AMCG00017452
AMCG00017455 mRNA upstream 286746 4906814 ~ 4914079 (-) True AMCG00017455
AMCG00017460 mRNA upstream 350340 4970408 ~ 5010102 (-) True AMCG00017460
TU112697 other downstream 56744 4542775 ~ 4544760 (-) True G90400
TU112472 other downstream 1985980 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 4249718 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 4495619 105685 ~ 105885 (-) True G89804
TU112828 other upstream 538316 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 538316 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 602405 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 1767184 6387252 ~ 6389038 (-) True G90715
TU113210 other upstream 2268654 6888722 ~ 6914790 (-) False G90746

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000129_00848220_00853128.mRNA True 1367 mRNA 0.52 3 CI01000129 848220 ~ 853407 (+)