RNA id: AMCG00017452


Basic Information

Item Value
RNA id AMCG00017452
length 3648
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00017452
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4876511 ~ 4884349 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTACTATAAACCTCGGCAGTGTGGTGTAAAGTTTGAAACAAGCAGAGGTGTGGATACGGTTGTGAAAATATTCTTAACTTGAGTTAATACACTACCGATTACATAAGGTAAGAGATTGTTTATTGTAACTGTGTggcgataaataaataaatataggtgTGCACAACTCGCTACTGATGTAATTTAACTGTTGCTTTCTTAAAACGAGTGTTTACAATCGGCACGTTGTTTTCTCGGcctattattaatttattgtgtgtatttcgTGGTTGCGGACGTACGTTTTGAAAACTATTCAGGGGATGGGAAAAGTCCTAGTATGTGGAAAGTTTGTTTAATCAGATTCTGTGTTTTGCTGTTTATGTCTTCGCGCCGTTTTTGTAGCCAATGAGAACCGTGAAGTATGAAGGCTGGAAATGAAATGACAGACCGTGTCGCTGCGGGGACGACAGCTGCGCCCGCCTCTCTATTCGCTGCTTGAGCAACCTGCTGCTCTCAAACATGACACGAGTGATCACTGCCCTGGATATAGATCTGTAATCGCAGGACACTGCCTCTCAATCAGTTTTCAATAAACATGTTTCTAAAGCATGGGCACAGTACATTTCTCAAATATTGCATGGgtgcataaaatatttactatagctttatagtatagtatttttATGCCACCTATTATCTTCTGAATAGGGGAATTCTCACGTTTCCACGCTGTTAGTGCCTACCTAATGAAAGGGCAGAGATTAGGAGTAACATTTCTCTAAAGTTCTCCATTATAGGTGTGCAGTCGTTTTACATGAATCATAAAATTGATCCCCTCTTCTTTCATCTCGGGTATTTGTGTACATTAAAATTATGATGTTAAACCAAAAGAGCACATGGCCTCATATTTCCTGATCATTAACAAACCCATAAAGAAATAATTGTTCATAAAATTTAAAGCTTCAGCTTCTTGAGAGGTAACACCAGAGCGAGGCGAAATGAACGACGGGAGTCAGTTTGTGGAGACCCTGAAGAAGCTGAACTACCCCAAGGCCTCCGAGCTGAAGGGGGAGGATTTCGACTGGCTCTTCGAGTCCCCTGAGCACAGGTGCTTCCTGCGCTGGTTCTGCAGCAGCGTGAACAAGGAGAACGTCTTGAGTGAGGAGGAGGTGACGGCTTTCCAGGCACTCAGGGAATTAGGCAAACCTATCCTGGATGAGGCTGCGCTGGTGGATGTGCTGAAGACCTGCCAGAGTGAGGAGCCCCGCAGGGACCTGGCCTTTCTGGAGGAGCTGGGGGtggagcagctggaggaggagctgcaggcGCTGCGCagggagaagaagaggaagatgCAGAGGCTCAGGAGGCTGCAGGTGATGACCACAGCCAGTGCTGACACTGCCCTCCGGCTCACCTCTCAGGAGAAGGAGGCCTCTGTGGCACTCAGGGAGACTGTGGAGGCCTTGGGGGCAGAGAATGCCAAGACCAACCATGACCTGCAGATCCTTGAGGAAGAGGTGAAGAAGCTGACAACCTTCTTCTCCCCTGGTGCTGAGCAGGAGGCTGGAACACAGAGCCAGCCACCTGTCTTCCTCTCCCAGCTGCCTCTGGAGACCTATTTGCATCAGGAGGAGCTCAACACCAAGGCTCTGACCTCATTCACACAGAAGCAGTTCTTCCAGGGCATCTCAGACCTGGTGGAGAGCTCCAACGAGGAGAACTTCCGGCTCTTGGACCTCAGCAGCAGCTCGGCTGGCAGAGAGGACGGTCAGGTTCAGCAGGGCCACAGGAAGGAGATGGCCAGGCTGCAGTGTGCCCACAGCATGGCCCAGTACCAGCTGATCCAGGCCACAGCCCAAGAGCACAGCATCAGGGCTGGACTGCAGTGGATTGACGCCAACGCCAGTACAAAGTTGAGCGGCTCAGTGCAGGATCTGGAGGTGCGAGCTGCCAGGCTCAGGAAGGAGCTTGAGGCTGTGCAGAGCCAGGTGCAGACTTTGCAGAGTGAGCAGCTACCAGCTGCAGTCCGGGAGAGCGCCCAGCTCCTCAACGTGCCCGTGGTCAGAGGAGACATTGACCTGCAGATCGCCCGGCAGGACTATTACACCTCCAGGCAGGACGAGGTGTGCTGCCACCTGCTGAGGCAGAAGGCCTCCTTTGACCTGCTGCAGCTGGGCTACGAGCTGGAACTCAAGCAGGACAAGGAGCTCCACAAACAGCTGGAAGACCTGGTCCAGCACCTGGAGAGTAGGTGCAATAACCTCTCTCGGCGCTTAGAGACCTTCTCCAGCCCAGAGCTGGCTGTTAGTGTGCAGCCCCGCAGCATAATTCACTCCAAGGACACAGTTCTCTGCAGGCTGTACCAGGCTCTGGAGGGGAAGGCGACGCAGGAGCAGCCTTTCAGGACGTATGAGGGTCTGCAGCAGGCCGCCCTGGCTCTACAGCAGGAGCTCCAGTCTGTGAGGGAGGCCATCGCCAGTGCTGAGCAGGAGCAGGCTTACAGCATGGCCAAGATGGAGGCCGACTCGGATGTGCTACGCAGCACAAACTACTGTGGGCTAAAGCAGCTGGTGCTTACTCCACAGGAGCTGGGAGAGAGACTGCTGCACCTGGAGGCCCAGCTGAATAAGCTCAATCAGCTCATGCAGGAAATCGGCAATGACATCAGGACTAAGAAGAGCATCCTGGAACGCAAGAAGCTCCTGCGCAAGGAGCGCAAGCTTTACGACTACTTCTTCCAGGACGAGGATTACCTCAAGAGCACTATCAGAGATCTGGAGGATAAGGTCAGGGCTGTCACCATTGGCCAGGCAGACTGACAGCACAGGGGACTGCCTACTTTTGCACAAGTGGAAGCCTGCCTGTGGGGATTGGCTCAGCTGACATTGTCATGCGATTGCCAGGAGGATTGGAAACTTGAGCTGTGGAGCTCACCCCAGGACGGATGGCCGAGGCTCGTTTCCGCTCATCTCCTGGGCAGGTTACCTTATGCCTGCTGTTCCTGGGTCTACCAGCCAGCTGGAGAGGAGCAGGAGGGAATCTGCTGAacttctgggaaaaaaaagttgaaactTAAGGCTATAACTTAAATCCTTTTCTGGCTATAATTAACATCATCCAAaggcaaaattatattttcacagtgAGCATCATCTATTGAACACTTAAACATTTAGAGGATATGAATCCTTTGCCATTCtgtacatcaaataaaaaaatcctggCTGAAGGGGACCTCTTGTGGTCAGTTTGGGTGACTACGTACTGTAAAACTATTCCACTGACTACTTTGGATGGTGGATGGTGTTTGATTAGCACAAAAGTTTATTAGCCATGATTCTTTGCTTTGgttatttttcatgttgtgtTAAGAATGTCTAAAATGCTTTGGGAAACCCAGTGTGTGGCTATCAGATATCTGTGTTAGATGGATTACACTCCCTTGGCTACCCTTTTATCTagaacattaacaatgtctcaAATAAAGTTGTAAACCCTTGTTTTTCAGCTTCACTTGAAACCTTTTATATCTCGTTGTAAATCCACTTCATATACTTGATTGTGCTTCATTGAAACCCCTCCAGATGAGTGTGAATGCTAATCCAGGGGGGCATGTTCCCAtgtgcagggagagagagagagagagagagagtcaggaCAA

Function

GO: NA

KEGG:

id description
K16586 HAUS3; HAUS augmin-like complex subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112709 lncRNA downstream 211344 4662836 ~ 4665167 (-) True G90411
TU112634 lncRNA downstream 486021 4384583 ~ 4390490 (-) True G90345
TU112644 lncRNA downstream 528199 4348094 ~ 4348312 (-) True G90355
TU112643 lncRNA downstream 529220 4346986 ~ 4347291 (-) True G90354
TU112594 lncRNA downstream 673704 4202607 ~ 4202807 (-) True G90307
TU112750 lncRNA upstream 45037 4929386 ~ 4937166 (-) True G90443
TU112856 lncRNA upstream 371740 5256089 ~ 5256406 (-) True G90520
TU112880 lncRNA upstream 470913 5355262 ~ 5356316 (-) True G90540
TU113031 lncRNA upstream 792550 5676899 ~ 5677249 (-) True G90648
TU113053 lncRNA upstream 895531 5779880 ~ 5780526 (-) True G90670
AMCG00017453 mRNA downstream 14534 4692133 ~ 4861977 (-) True AMCG00017453
AMCG00017448 mRNA downstream 215353 4643696 ~ 4661158 (-) True AMCG00017448
AMCG00017447 mRNA downstream 256443 4601504 ~ 4620068 (-) True AMCG00017447
AMCG00017443 mRNA downstream 291554 4558905 ~ 4584957 (-) True AMCG00017443
AMCG00017441 mRNA downstream 325629 4537971 ~ 4550882 (-) True AMCG00017441
AMCG00017455 mRNA upstream 22465 4906814 ~ 4914079 (-) True AMCG00017455
AMCG00017460 mRNA upstream 86059 4970408 ~ 5010102 (-) True AMCG00017460
AMCG00017458 mRNA upstream 167943 5052292 ~ 5067312 (-) True AMCG00017458
AMCG00017459 mRNA upstream 324584 5208933 ~ 5209817 (-) True AMCG00017459
AMCG00017466 mRNA upstream 520495 5404844 ~ 5425674 (-) True AMCG00017466
TU112697 other downstream 331751 4542775 ~ 4544760 (-) True G90400
TU112472 other downstream 2260987 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 4524725 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 4770626 105685 ~ 105885 (-) True G89804
TU112828 other upstream 274035 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 274035 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 338124 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 1502903 6387252 ~ 6389038 (-) True G90715
TU113210 other upstream 2004373 6888722 ~ 6914790 (-) False G90746

Expression Profile