RNA id: AMCG00017454


Basic Information

Item Value
RNA id AMCG00017454
length 2152
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00017454
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4884961 ~ 4900663 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATACGGACCCAGTGTCGCGTTGAATGAAGATGGAGGAATGAAACGAATATTTGGGAACTAAGagtggtttaattaaatgagCTTGAACCAAGGCACCTCGTTAAGCGACAAACCTCAAAGTTTACTGGCATGGTGTAGAAATACAGGAGAACGAGTCATTTCTGTGTAGCGTTCCGGACACAGGAGGAACAATGGTGAAATACTTCTTCAGTGAGACGGAGATCAAGAGCGCATGGGACCAGGTTTTTACTGCTTTCTGGCAGAGATATCCCAACCCTTTCAGACGCCTCCTGATAAAGACCAATCGCCTGCCTCGCTGGGCAGAGAGGTTCTTCCCCTCCAACCTGGCACGGTGCGTCTACATCATGGAGGACTCAGTGGTGGATCCCCGCAGTCGCACTCTCACCACCTTCACATGTAATATCAACCATGCAACCCTCATGGTGGTGAAGGAGCAGTGTGTGTACAGCCAGGACCAGGAGCGGCCCACCTGCACACACCTCACACGAGAGGCCTGGATCTCCTCTGGTGTGTTCGGCTTCTCCAGGGCCATTCAGGAGTTTGGACTGGCCAGATTCAAGAGCAACCAGGTGAAAGCCATGAAGGGCCTGGAATACGCACTATCTAACTTGCACGGAGAAGGATCCTCCTGGACTCCCAAGGACAAAACCAAGGATGCCACCGTGAAAGCTAAAGAGACTGCGCTGGCAGCCACAGAAAAGGCCAAGACCCTGGCCACTGCAGGTGCCCCCCAGAAACCCAACCAGTTTGTGTGACATCTGCCCACACTGATGGAGGGGAACTTCGCGGACACACGGACGGACTCGTGTGTAGAAGAACTGATATCTATACCTGCACTTAGGTTAAAAAAGGCTAAATAGTCGATTTCTTTGGACTGGCAACAACATATCCTTATTAGTCAATGATCTGTGGCTTGTTATCTGCTGTCTATTTAAGCCAGTAATTGTGGCTCGATGTATCTAACTCTGTTCTGACTGTATCCAGGTCCAGTAGAGTCACTGAGGTTTCTGTACCCCTGCTGTAGCTAAAGATTTTAATGCAGCCTTTAACTCTCAGgtacttttaatattatgcatatgaaatgcaaaatgtatatatacaaacactgtATAAACTTGTGCATACGTCATCTCCttcatgttttttaatctaataatagtttgtttttgtatatgtaGACCTATATAGTCGTCGGGACTCTTTTCAcatcaaatattttgaaaaatcatCCACTTATTGCACAAACTAAGTGAAGGGATAAAACTGAACTGTTTATAAGTGACCTATTTTCAAATCAAGTGTTGTGTAAGGCGTGTGAGGATCTTCATCAATGACTGAAGaccattttaacactttcattgtatttatactttaaattatttgaatcaACCACTGaaaatgtggattttaaagaactatttttcagttttttaaagacTGAATTAAAACCTTACGGCATTCCTTTCCAACTGCATAACCTTTATGAAAAAGATTACAATGTGAAGAGAATACTGGTGAGTTTACAGCAAAGAGTGGAAGATGTGGGAGGTATTAGTCGTTGTTAGTTGTTGAGGATAGAATATCAGTGGTGAGTAGCAAAACACTGCAAAGCTAATGTGACCATGGGATCATGCCATTTGTAAGATTGCCTCCTGTTCTGATCAACCAATGTCATATGAAGCTAATTCTCTCTGTACAAAGCGGGCAGGTTGGGGTGCAATGCAGTGGGCTCTGCTGCATTGCAGTCTTTGCACAGGGATTTTCCAGATTTCAAGATGCACTTCTGCCCCTGAACTGTAATAGCACTACTTAAGGAGGACTAGATTCCTGATAATGTGCAGGTTTGATTATTTTCAGAACTGTggaaataacatacattttgttcCTTCTTTCTGATGTTGTGGCCAAACTTATTCTGCCGCACTGGAATACTGGAGTTGTTCAGCAAATGTGGGACGTGCAGCACGGCAGCTGCTGGCTTCAGGCAaactgggagggagggagggaggatcTGAATGTCAGGATATCTGCGTCAtacttctgtctctctcttttaatacttttttatattgaaatatgtcTAACTCTGTGTGAAAGTTTGCTATACTTAATAAAGTGGCTCAGTACTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112713 lncRNA upstream 174887 4697938 ~ 4710074 (+) True G90413
TU112680 lncRNA upstream 278390 4596791 ~ 4606571 (+) True AMCG00017445
TU112626 lncRNA upstream 494420 4385241 ~ 4390541 (+) True G90338
TU112625 lncRNA upstream 554378 4330370 ~ 4330583 (+) True G90337
TU112621 lncRNA upstream 572486 4312258 ~ 4312475 (+) True G90333
TU112743 lncRNA downstream 359 4901022 ~ 4910792 (+) True G90436
TU112786 lncRNA downstream 187930 5088593 ~ 5098887 (+) True G90475
TU112788 lncRNA downstream 191005 5091668 ~ 5138775 (+) True G90477
TU112790 lncRNA downstream 191005 5091668 ~ 5222752 (+) False G90477
TU112794 lncRNA downstream 228124 5128787 ~ 5222752 (+) False G90477
AMCG00017451 mRNA upstream 16491 4861374 ~ 4868470 (+) True AMCG00017451
AMCG00017450 mRNA upstream 193006 4689878 ~ 4691955 (+) True AMCG00017450
AMCG00017446 mRNA upstream 196738 4662625 ~ 4688223 (+) False AMCG00017446
AMCG00017449 mRNA upstream 251351 4628215 ~ 4633610 (+) True AMCG00017449
AMCG00017445 mRNA upstream 285073 4592802 ~ 4599888 (+) False AMCG00017445
AMCG00017457 mRNA downstream 108518 5009181 ~ 5048242 (+) True AMCG00017457
AMCG00017456 mRNA downstream 331805 5232468 ~ 5272687 (+) True AMCG00017456
AMCG00017464 mRNA downstream 430093 5330756 ~ 5351825 (+) True AMCG00017464
AMCG00017463 mRNA downstream 455099 5355762 ~ 5370642 (+) True AMCG00017463
AMCG00017462 mRNA downstream 472694 5373357 ~ 5375454 (+) True AMCG00017462
TU112690 other upstream 217131 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 2189508 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 2189508 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 4673025 207586 ~ 211936 (+) True AMCG00017388
TU111993 other upstream 4786578 93120 ~ 98383 (+) True AMCG00017386
TU113125 other downstream 1829075 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 1829075 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 1829075 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 1829075 6729738 ~ 7184790 (+) False AMCG00017486
TU113139 other downstream 1904081 6804744 ~ 7184790 (+) False AMCG00017486

Expression Profile