RNA id: AMCG00017456


Basic Information

Item Value
RNA id AMCG00017456
length 4543
RNA type mRNA
GC content 0.39
exon number 14
gene id AMCG00017456
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5232468 ~ 5272687 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGGCTCGGTGAGGAAAAGGAGACCGAGAATGAGGAcaaggagagggagaaacagGCAGGGATCAGCAAGCCAAAGTCGGAGAAAAGCAGCAGCCCCTCAGAGGTGACAGAAACGTTGGGTTTTTATGAAAGGAAAGCTGTCAAGCAGGAGAAAAAGCGAAGTCTGTCAGaccTTTCGTTGCTGAGGTTCATTAGTGCTGAGCTGACAAGGGGATACTTTCTGGAACACAATGAAGCAAAGTACACagagcggagagagagagtttacaCATGTATGCGGATTCCCAGAGAGCTGGAAAAGCTGATGTTTTTCGGGTTCTTTCTGTGCCTGGATGCCTTTTTATATGTCTTCACTCTCCTCCCTCTGCGAGTGATCCTGGCTCTCATCCGGCTCCTCACCCTGCCTTGCTGTGGACTGAAGGCAAATACATGCCCAttctgcaaaaagaaacaaaatagcaGtggcACTCGCTTGTTGCAGCCTGCCCAGGTTTGCGATGTCTTAAAGGGTTTTATAATGGTCATCTGCTACTTCATGATGCACTACGTAGACTACTCCATGATGTACCACTTAATCAGAGGGCAATCTGTCATCAAGCTCTACATCATCTACAACATGCTGGAGGTAGCCGATCGATTGTTCTCGTCCTTTGGGCAGGATATTTTGGATGCTTTGTACTGGACTGCAACAGAGCCGAAGGAGAAAAAGCGAGCACACATTGGTGTAATACCGCATTTCTTCATGGCGGTACTTTATGTGTTTCTACATGCTATTCTTATAATGGTCCAAGCAACAACGCTCAACGTAGCCTTTAACTCTCATAACAAGTCATTGCTCACCATCATGATGTCAAACAATTTTGTGGAAATCAAAGGGAGTGTTTTCAAGAAATTTGAGAAAAACAATCTCTTTCAGATGTCAAATAGTGatattAAAGAGAGATTTACAAACTACATACTATTGCTCATAGTGTGTCTAAGGAACATGGAACAGTTCTCATGGAACCCAGGTAAACTTTAAAATCTTTCCTGATGGATGAGAATCCTTTTTTAGattgtcattgttttaatgaaaaatatcaaaattgttaaaaaatgttacttATATTTTGTCTTCCAGGTGTACAGTGAATACAGAGCCAGCCTTGCTTTTGACCTTGTAAGCAGTCGGCAAAAAAACGCATACACAGATTACAGTGACTCCGTGTCCAGAAGAATGGGGTTTATTCCTCTTCCTCTTGCGGTGCTTCTAACAAGAGTTGTGACTAGTTCTGTGAAGGTCCAGGGTTCCCTTGCCCTTGTGTGTGCACTGTTGTTCTATTTGGGGATGATAACACTCAAAGTGTTGAACAGTATAGTGTTGCTGGGGAAGTCTTGTTTATATGTGAAAGAGGCCAAGATGGAGGAAAAGTTGTTTCAGAATCAACCAGCTGCAACACCTGGGAAACAAGCCAGCAAGTCAAAGAACAAATTCTCAGCCCCACCAgGCGATCCAGGAGACGAGAGTCTTTCTGCATCTATCACCAGCCAACCAGTTCACCAGTCTGAAACCCCTTCACCTCTGCTCCCAAATAGTAACTCTGATCAGTTCCTCACCACTCCAGATGCTGAGGAGAAGGACATCGCGCAAGACAGATCAGAGCTCAAGCACAGAGCGTCAAAGAAGGATCTGTTGGAAATTGATAGGTTCACAATATGCGGAAACCGGATTGACTAATCTTTTCAGCTTTCCCCATTGAAACTGCTCAGGAGTTACAGCATGGCAAACGGTATACTGCCAACAAGAACATCCTTCGCCAAAGAGTGGCACTAgagtatttattgaaatacaaataatttattgttGACTGGAAGAATTATTTTTaggtccttttttctttttttctctcccctaaTCTGAATGGTAACCCTGCCACGACATAACGTCTGAGTCACTCGGGATGCAGTGTCAGAAAACATTTGCTCTGTCCACTTCAACTGTGGAGCTGACTGGACTGGAGAGGAGCGCTGCTTCGTGTCAAAGAGCTGGTGGCACAGGCAGCCTGAAGGATCGAGGTGGCCACGCTGCATCGACTCAAAtcgaaaacaaaacacaacaatgcaCTGTTATTCAAAAGGCCTTCGATATAGAAGGATGTGCCTATGACACTGCAAGAATAATCCATTGCATTATAACTCTTCTTTTTTTACTGGAGAGTTAAAGACTACGCAGTGGTGCGGACTTCGATTcagcataaatacattttcctgtcCCCCCTGCGTCACAGTACAGTAGGTCATTGAAAACATCAGCTGTTAACAACCCTGTCTTCTTTAACAATCCTATTCCAATTTTGCCAATTCAAAAAAGAGCTCTAATGGCATTACTGACATTGATTTATAACAAGGTTTCCTCAGTTGCATTTGACCTTTCAGAGTGTCTATTGAATAAAATGATCTGCGGATTAATTTGAATGTAGTAAGGACACAACTCTGGTTGCTCATGTAAGATTGCCATACgctttgatgtttgtttgtttttgcttgtttttttacataattcaaAGGATATGAAGTAGAATTaggtaaaacattttgttttccagtgaaTGCCGGTACACAGTAGATGGCAATTCATTCTGCGGTTGCTGTGTACTTCTGTGCTCCCATATATAGTATGCCTTGTTGAGAAAACCCTGTTCGATCATAGAAAGGGTATTGCGGAGAATGTCATAATACAAATGCCTGTACTTTATAGCAGGCAGCTTTTTTAGATGCACTTTTCTTTAGGCCTGGCATTTGTCTTGGTTTTGCTTagtttttttggagggggggttctttgttgttgttttggggtGTTTTTTGCACTAATTTACCATACTGTCTTAAGCTTCATCTTTTGCAACAGTAATATCCATTCTTCGCAAGTGCTTAGAAATAACTGAGCTAACACGGTATTTAAACTGTGTTATGACTATGCCCAGATCATTAAAATTGTTAACTAAGGAAACTCTTGAAATATTGGAATGTCTCAAAaatgcttatatatttatattattataagtacTGACCAGCATTGAATAAACACCTTTTGTGTGAAGTTGTTTAGTAGTCTTTTAGATGTTGACTTGTGCTCTCTGAAGTCTactgggaaaaaaagaaaaccattaacAAAGCTTCTAGAATGCCAAATATGTAGTAAGTATTTTGCTTAGCCTACAGCTTAGAGTTATCTCATTCCCAATATATTACaacaaattattcttattaaattCACTCCAGTTTGATTAACtcagaaactatttaaaataatttggattGCACACTATATTGTGTAAAACTAGTTGAATATCAAATATTTCCTCTAAGCTTAATTTCAacagaaatagtttttattgaataaaaGGCATAGTATCCACATAAGTCCATCTGGATTTTTCTTGGTGAgatatttaataacaaaaaatagattaaaatgtaatataaacatttcCATACCAGCTTTCCACTCTTTATCTGATGTCACACATTTGCAATACATTCATCATGGAATTATGAAGATATCCTGTATTTTGAGAACGCTGAACTATAGTATTTTAGCGAGTTGGATGGTACAGTGGATAGTATTTTGTGCATGGAATCCAGTAgtgaatacaaacatttttgtacACTTTAAGAATATCTTTGTAATGTGTTGTAAACAAAATCAGTAATGGTtgaaataatttcatttttcatgtttaaaatacaagaaTCTGTACCTTTGTAAGAAATGCATCTCATTGGGGGGTGATGAATAAAAGTCTTTTGTaactttgtgttatttattttttaattttcttcgaTTCATGTTAACAGTGTGCAATATGCTTTTGTATTCATGGCACATAAGAGTTGTGTTCTTACTGTACTGCAGTCACATTGTGCATTCAATCTGAACACTATTTGAAATGTGGATGACACAATTTCAgatgtacatttttacacatgTACAGAGATGTACATTTTTACCAGTGTGAACAATAAAAGGTCAGCAGCTGTGAATTAGATGAAGTGTGGCAATAATACACCTGAACGGCCTTCGTTTTGAATTTCAGTTCTCAGTCAGGTGAGTCTCGGCCGTGCAGGTGTGAGGGCAGATGAAACACGGGCAATCTGAACAGTACAGTCAGAATGAATTTGCTGATGTTTGCAAAGCCTTTTGACACATCAGTGAACGGCTGGACGCTGTCAatcagaaagaaatgcagacaaAGCTTTTTTATTAAGGGCTGAACTGCTAGAATTAATCTTGACCCATCACTATCTTAAAGTCATTGTAGAACATTGATTTCCCAggattctctctttttttcttcttttaaccACCTTTGCCATTCTGTTATTCAGGAATGTACCAGGTAACTGCCCACACCATTTCTTCTAGCCTTACTTTCCCAGTCTTGTGATCATGGTGTGCTGACTGTGTCTAACTTTAGACTGAAGTCTCGTGGTTTCAGGACATTTCTTGCCTTTCTGAATGTTTTTGGTAAGTGCAATAAAGCTTTTCATTCAGGTTTTGAA

Function

GO: NA

KEGG:

id description
K23404 TAPT1; transmembrane anterior posterior transformation protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112790 lncRNA upstream 9716 5091668 ~ 5222752 (+) False G90477
TU112794 lncRNA upstream 9716 5128787 ~ 5222752 (+) False G90477
TU112788 lncRNA upstream 93693 5091668 ~ 5138775 (+) True G90477
TU112786 lncRNA upstream 133581 5088593 ~ 5098887 (+) True G90475
TU112743 lncRNA upstream 321676 4901022 ~ 4910792 (+) True G90436
TU112894 lncRNA downstream 132755 5405442 ~ 5407529 (+) True G90551
TU112895 lncRNA downstream 134961 5407648 ~ 5412689 (+) True G90552
TU112898 lncRNA downstream 139044 5411731 ~ 5412261 (+) True G90554
TU112908 lncRNA downstream 167525 5440212 ~ 5463064 (+) False G90561
TU112907 lncRNA downstream 188580 5461267 ~ 5463064 (+) True G90561
AMCG00017457 mRNA upstream 184226 5009181 ~ 5048242 (+) True AMCG00017457
AMCG00017454 mRNA upstream 331805 4884961 ~ 4900663 (+) True AMCG00017454
AMCG00017451 mRNA upstream 363998 4861374 ~ 4868470 (+) True AMCG00017451
AMCG00017450 mRNA upstream 540513 4689878 ~ 4691955 (+) True AMCG00017450
AMCG00017446 mRNA upstream 544245 4662625 ~ 4688223 (+) False AMCG00017446
AMCG00017464 mRNA downstream 58069 5330756 ~ 5351825 (+) True AMCG00017464
AMCG00017463 mRNA downstream 83075 5355762 ~ 5370642 (+) True AMCG00017463
AMCG00017462 mRNA downstream 100670 5373357 ~ 5375454 (+) True AMCG00017462
AMCG00017465 mRNA downstream 105772 5378459 ~ 5379148 (+) True AMCG00017465
AMCG00017461 mRNA downstream 152744 5425431 ~ 5459702 (+) True AMCG00017461
TU112690 other upstream 564638 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 2537015 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 2537015 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 5020532 207586 ~ 211936 (+) True AMCG00017388
TU111993 other upstream 5134085 93120 ~ 98383 (+) True AMCG00017386
TU113125 other downstream 1457051 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 1457051 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 1457051 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 1457051 6729738 ~ 7184790 (+) False AMCG00017486
TU113139 other downstream 1532057 6804744 ~ 7184790 (+) False AMCG00017486

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001947 True 4027 mRNA 0.40 14 NC_007112.7 22770255 ~ 22803147 (-)