RNA id: AMCG00017457


Basic Information

Item Value
RNA id AMCG00017457
length 3926
RNA type mRNA
GC content 0.47
exon number 23
gene id AMCG00017457
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5009181 ~ 5048242 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGAAACTACGCGCGTCCAGCAGCGCCGCTGACGGCTCTGCACAGCGCATGTGCAGCAGCTACAACAGGGATTGACCGCCCGgctgtctcctctctctgaTCAAACACGGCAAACGCGGGTTCGGGATACAAATACAACCCTTCAAAACTGGATTGGTTGGCTTAACTAAAAAGCCCCTTCTCTTCAGTGGTTCACAGTGCTTTCGTTCAGTATCCCTCCCCCTCATCACGCCCGTCCCTGTTTTTATTGAAGCCCAGGCTGTGCGAGGAGCGGCGGCGGAGCGGCGCGCAGGGACCCGCAGCCAGACAGAAATGGAGACGAGCAATAGCTCTAGAATATTTGGAATCCTTCAGGATTTTCGACTGCAGAAATACTACAATGGCTTTCTGGAACTGGGAGTCATAGATGAGAGAGATTTTTTGGACAGTATTTCACAGCAGAATTTAAATGACCTAGAGCTAAGCCCTTCGGAGAATACCATTGAGGATCTCATAATGAGAGTTTATCTGAAAGAGAATATCAGCCCTGAGCAGACTGTGTGTTTATACACCCATGATGGCATTCCCTTGACAGATGACCCTTTCTTCAACAAATGGAGCCTGAGTGATCGCCACATTGCAAACGGAGAGCAGCTGTACGCCATCTTCACCCTGAAGGAGAATGTCAGCCTGAGTCCCACTTTACCACCTGACCAGACTGCTGACCCCAGCCTGGGTCAACACACCTTGCACTGCCATGTGATGCTCCGAGAAGGTTGGACAGACAATTCAGTACTGGAAAGCCTGGGCCTCTCTGACCAGTCAgaggtccatgtgtccctgtcCTTATTCCCGCTCTTTGATATGGGCTTTGCTGAAGCCAACTTCATTGCTGATGTTAGGCCCATCATGCAACAGAGTGAGAAGGGCATCAGCATCTTCTATTCCTCTCTCTATTCAGTGGCCTCCAAGTGTCGCGGGCAGCAGGGCTGCAAGCTTATAGCGCTGCTCCGCCAGCTTACAGGTTGCCACCCCCTGGCCCAGGCCCTCTACCAGGTCATCTGCAGAAATGATTGTGTGAGCAAAGCACAGAAGAGTGGAGGCGCTGATAGGGAGCAGTACGCTACGCTGTCCCTGTTATGTGCGGGATCGCAGCAGCATCTCACTGAGCCAGTGCGCGTTCCTGGACTGCCCACTGTGTTTGAGCGCAGATATATCATCAAACAAATCAAAGAGGACAAAAGAATTCCTGGGTGTTCTGAACAGAACCTGAGCACCCTGAGCCTGCAGCGAGCCAGCGATTTGGAGCGGGTCTTACTGTGCCTGCCTCTCTCAAGGAGGTCCTTCCCACAGTGGGTAACAGATCCTGATGCTTCATCTTATGGGAACTTCCATTCTGTCTCCAAGAAATCATACAGTGACATGTACTCTGCTCTTAAAGAGACCCATTATCTTCAGATCACCCCCCCTCTGGTCCTGAAGGGCCTGGGGCTCACTGGGCCATTGCTGGTGTTCCTTGAGAAAgATCATCTTGGAGTTTATACAGGAAGACATAAAATGGATGCAAACAATGTAATTGTGTTTGATGTTCAGAATGGGAAGACAAGGACTGTGGATGTGGACATGCTGGCTGCCAAGTTACAGGATAAGAGAGAGACCCTGACATCAATCAACACCACACGTATACCAGTGGAAGCCATACTTGTGCTACTGGACTGCAGCTTGTCCATGGAGGAGGGACGATTTGAAGCTGTCAGTACCCTGTCTCGCTTGGATGCAGTGAAGGTTCTATTTGAGGCCTTTGCCAACAGGACCATGGCCTACAACTTTCACCATATTGTTGGGCTGGTGACATTTGGAGGAAATGCAGATGTTAAACGTATACACACATTCACTGAGAACCTGGAACACTTTAagGAGTTTGTCTCAAGCATAAGGGCGTCAGGGTGCACTCCGCTGTACGATGCCCTGGAGCGAGGGCTCCGAGAGCTAGAGGAGGTTCGTTCCAGTTTCCCTGACTGCAGGCTCCGCATGCTGTGTCTCACTGATGGAGATGATGTAGGCTCTGACAGCAACCCAACGAGGACAGTGAATAAGCTGCAGGAGGCTGGCATTGTGGTGGACGCCATTATTATTGGCAGCGTTAATAACCCTGTGCTGCATGGCATCAGCAATGTCACTGgCGGTTGCTGCTTTAAGCCAGAAACTCTTTCAGAGGCTCTGAAGCTGTTTGAAATGGAAACCGTTTTATCACTGAACAGCCGTAATGTAAAACCAAGCCATCCTGAAGGGTCCATCAAGAGATTGGCAGACTTAAAGAAAATCTTTGCAACTCGTGGGTATGATTTTGAGCCAGAGAAGAAGGTGCCTTTGGAAGTCCAAAGCAAAGTTGCTCCTGCATACAAGGTTTTCAGCAGGAAGTCCAAAGAGCACAAGGCAGTGAAAGAGCAGAATGTGTCTTTGCTGCGTGAGAAGAGGATTCTGGAGGAGATACGAGAGTTGCACCTCTCCCCTCACCCCTACTGCCGAGTTTACCCCTGTGAGAGCAACATAGCTTTCTGGCAGATCCTCATGATGGGGCCGTCAGAAACCCCCTATGAGAATGGAGTTTTCCTCCTGTACTGTCACGTGGGACGTATCTGCCACAACATCTTTGACAGGAACTATTCGGCCCATGTGACTGTGAAGCAGATCCTAGATGCGGTGTTTGGCCTTCTCATCACACCAGAGCCAGAGGACCCACTGGACAGCATACTGGCTGAACAGTACATGATGGCCAGAGAGGAGTACCTGGAAGAGGCAAAGAAGAGAGCAGCTGATGAAGCCAGCCCAACTCTGGAGGACATGGAGAAGAAGTTACTGGGCTCTGACCTGGATGATAACCCAGGTCCAGCCCACCTGGTCTGCCGCCTGTCCAGACAGATGTTTGTCGATCCTGTGGGGACCTGGTATGGAGACGTCTATGAGCGCAGGGCCATTGAGAAACACCTGAAGACAGAGCACAGGGACCCTTTCTCAGGAAAACCTCTGGACATGAGCTGCCTTAGACCTGACCACAACATGAAGAGAATGGTGGATGCCTTCCGCATGCATCAGATGGAGGACGACTCCGTGTGAACTAGACTGGACCACTGCTTACTGTGACGCTGTAACCGTCTGagattgtaaaacaaaacaaagtttaccATATAAATGCACTTTATTGATGTCCATAGCCACTCTCACATCTTTATGAGAGGAATCATAAAACAGGATCTCgagtctgttttcattttattccagtgGAGCCCAGAAGTCTGTTTATCATTAGAACTTAATAATACATGGAGAAGTAACCACAAATGCATGACATTCTCAAAACATACATCTTAAAAGCTAGTTGTTTAGCCTTCAATGCTGAAGTCTCTGTAGTGTTGAGTTGTATTATTGTAGtagttataaatatttattggttTTGAGTCTTTTACAGTCGAGAGTTTCCCTAATAagttgaacaaaaaaaaatcaccaatgTGTTTTAAGGTTCTTAGAGTTACACccttaaatgcatgtatttaaatgcaatttaatgtaattgatattaAGGTACATTTGTGAGAAACTGTCATTACAGGTGTAggaattctgtattttataggGTTGAAATGGAAAGatctcccttttctttttctgaaatgttaaatgttatttactCGACTCCCTGTCCTGGATCTCCAGGCCCAATTGGTTTAGGACTAATTATCTATGTGGTATATTATGCTTTACCTTGGTGTGTCTGGTTCCCaagggaaaaagaggagattgTTACATGCACCAAAACCTTGAATGGGATTGTATACAAGCTGTACAGACAGGTATATTTGAGAATCACCTAGTCTTTGTATGCAATTGCTTTACAAACTCTTTTCATTCTAATTGAgcatttaataaatgtgattgTATTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112743 lncRNA upstream 98389 4901022 ~ 4910792 (+) True G90436
TU112713 lncRNA upstream 299107 4697938 ~ 4710074 (+) True G90413
TU112680 lncRNA upstream 402610 4596791 ~ 4606571 (+) True AMCG00017445
TU112626 lncRNA upstream 618640 4385241 ~ 4390541 (+) True G90338
TU112625 lncRNA upstream 678598 4330370 ~ 4330583 (+) True G90337
TU112786 lncRNA downstream 40351 5088593 ~ 5098887 (+) True G90475
TU112788 lncRNA downstream 43426 5091668 ~ 5138775 (+) True G90477
TU112790 lncRNA downstream 43426 5091668 ~ 5222752 (+) False G90477
TU112794 lncRNA downstream 80545 5128787 ~ 5222752 (+) False G90477
TU112894 lncRNA downstream 357200 5405442 ~ 5407529 (+) True G90551
AMCG00017454 mRNA upstream 108518 4884961 ~ 4900663 (+) True AMCG00017454
AMCG00017451 mRNA upstream 140711 4861374 ~ 4868470 (+) True AMCG00017451
AMCG00017450 mRNA upstream 317226 4689878 ~ 4691955 (+) True AMCG00017450
AMCG00017446 mRNA upstream 320958 4662625 ~ 4688223 (+) False AMCG00017446
AMCG00017449 mRNA upstream 375571 4628215 ~ 4633610 (+) True AMCG00017449
AMCG00017456 mRNA downstream 184226 5232468 ~ 5272687 (+) True AMCG00017456
AMCG00017464 mRNA downstream 282514 5330756 ~ 5351825 (+) True AMCG00017464
AMCG00017463 mRNA downstream 307520 5355762 ~ 5370642 (+) True AMCG00017463
AMCG00017462 mRNA downstream 325115 5373357 ~ 5375454 (+) True AMCG00017462
AMCG00017465 mRNA downstream 330217 5378459 ~ 5379148 (+) True AMCG00017465
TU112690 other upstream 341351 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 2313728 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 2313728 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 4797245 207586 ~ 211936 (+) True AMCG00017388
TU111993 other upstream 4910798 93120 ~ 98383 (+) True AMCG00017386
TU113125 other downstream 1681496 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 1681496 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 1681496 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 1681496 6729738 ~ 7184790 (+) False AMCG00017486
TU113139 other downstream 1756502 6804744 ~ 7184790 (+) False AMCG00017486

Expression Profile