RNA id: AMCG00017458


Basic Information

Item Value
RNA id AMCG00017458
length 1957
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00017458
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5052292 ~ 5067312 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCAAGGTCAGCCAGCTGGGGAGTTGCTTAAGAGATTAAAAAGcgttaaagaaaatgtaatattaaaaacgTGTTTTGTAGTCCTCTGCATTAAAGGAACCCTCTAACTAACTAAAGAATCTGATATTTTAACTGGGACATGGAAGCAATGCTACAGTAATTGTGCTGTTGTTGGATTAGAGTATCTTGGTTGCAATCTGCTGGATTGGGTGAAGTATGAAGTGCGTAAATCAGGATCAAGCTCGTCGTCTTCTCCACAACAAGTTTGTTGTAGTTCTTGGAGACTCCATTCAGCGGTCAGTTTATAAGGACCTTGTGGTATTGTTACAGAGAGACAGCTATCTTTCAGTGGCTCAGCTCAAATGTAAGGGGGAACTCAATTTTGAACAGGACTGCTTGGTGGAAGGTGGGAAGATGGGCCAAATGACAAACGGGACAGAGTACAAGGAGGTACGGCAGTTTCGAACCCCCCATCATCTGGTGCGCTTCTACTTCCTCACTCAAATTTACTCCAACTACATGGAGAGCATCCTGTCAGACTTCAAGGCGGGGCCACAGCCAGATGTGCTTGTAGTCAACTCTTGTGTGTGGGATGTGTCCAGGTATGGAGGCAACTCGATGACTGACTACAGAGAGAATCTCAATATGTTTTTCATCCAgctgaaaaaaacacttctccCAGAGTGTCTTGTTATATGGAACATGACCATGCCTCTTGGGATGAAGATTACTGGTGGCTTCCTTGTACCTGAGATCCAGCACCTGGGACAGTCACTGCGCATGGACATTATTGAAGCCAATTTCTACAGTGCCACCCTGGCGGACTCATTCGGTTTTGATGTGCTGGACCTGCACTACCACTTCCGCTTCAGCCTGCAGCACCGCATGAGGGATGGGGTACACTGGAACCAGCTGGCCCATCGGCGTATCAGCTTCTTACTGCTGGAGCACATCGCTGAGGCCTGGGGCGTGGAGCTGCCCGACAGCCAACTCCCCAACAATTCTGGTTACGGCGAGAACACTGGGGTTGCGTTTCATCATAGTGGCACCAGAGATGGTTTCCAGCCTCGACTAAACCGTGGACCTGCTGCAGGCTACTGGAATCTGAATGGGAGATTGGGGCCTCCTCTTATGAACTCCTACAACGAACCCCCAAGGATAAATGCCCCTAACTACAGTGGCCTCTGCAGGAATCACAATCGGTGGCTCAGGCCCTACAGCATGGATCCATACATGCAGTCCCCTGTGATGAATTTCAATGTCTCTGgACAACCGCGGCAACCGACCTGCAGATATCAAAATCCCCCGTATAGGTATGGCAGCTGTAACACAGCGACCATGTTCAATCCCTTTTTCCACAATGATTCTCCGCTCATTGGCACAACTTCAAACCCCCGTGTAATTGATGGCTACATCAGCTTCGAGGAGAACAACAAGATAAGAATGAAACCTCCAGGTGCAAATTAcgatggggtgccaacttctaACGCAAACCAATGGAGACCCTCTGGCAGTAATTTTGTGATGAGGCAGCGACCCGCAAAGAGGTTCTACGCTCCCTACAACCGATACAGCCATCATCCCAACTACAGATACTGAAGCTACAGAGATCTCCTGGCAGACTCTTTAGCAGTATTGGatttttatacatattgtagttttttttctttttttgtctatGCTAATACATCCATCTTTTTATTGCAAGAGTTCCCTTGATGGTTGTCTTGCTGAACTTCTTTTGTTTCAGTGAAACATGCtgagcattttatttatatatagttatatatgtaTCAGCATTTACCGTTTTAATAGttgtaaatgtttcatatttgaTTGAATGCTTTGTGGGGGTTTTCCCCTCCCCTCTGTGCATGATAGAAATGTCAATActtaaagctttattttatttttttcttttattgaaaatgtaagtaaaacCAGTTTGAAAAAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112750 lncRNA downstream 115126 4929386 ~ 4937166 (-) True G90443
TU112709 lncRNA downstream 387125 4662836 ~ 4665167 (-) True G90411
TU112634 lncRNA downstream 661802 4384583 ~ 4390490 (-) True G90345
TU112644 lncRNA downstream 703980 4348094 ~ 4348312 (-) True G90355
TU112643 lncRNA downstream 705001 4346986 ~ 4347291 (-) True G90354
TU112856 lncRNA upstream 188777 5256089 ~ 5256406 (-) True G90520
TU112880 lncRNA upstream 287950 5355262 ~ 5356316 (-) True G90540
TU113031 lncRNA upstream 609587 5676899 ~ 5677249 (-) True G90648
TU113053 lncRNA upstream 712568 5779880 ~ 5780526 (-) True G90670
TU113105 lncRNA upstream 1323573 6390885 ~ 6391229 (-) True G90716
AMCG00017460 mRNA downstream 42190 4970408 ~ 5010102 (-) True AMCG00017460
AMCG00017455 mRNA downstream 138213 4906814 ~ 4914079 (-) True AMCG00017455
AMCG00017452 mRNA downstream 167943 4876511 ~ 4884349 (-) True AMCG00017452
AMCG00017453 mRNA downstream 190315 4692133 ~ 4861977 (-) True AMCG00017453
AMCG00017448 mRNA downstream 391134 4643696 ~ 4661158 (-) True AMCG00017448
AMCG00017459 mRNA upstream 141621 5208933 ~ 5209817 (-) True AMCG00017459
AMCG00017466 mRNA upstream 337532 5404844 ~ 5425674 (-) True AMCG00017466
AMCG00017467 mRNA upstream 393753 5461065 ~ 5465561 (-) True AMCG00017467
AMCG00017468 mRNA upstream 399748 5467060 ~ 5484458 (-) True AMCG00017468
AMCG00017469 mRNA upstream 424124 5491436 ~ 5520155 (-) True AMCG00017469
TU112697 other downstream 507532 4542775 ~ 4544760 (-) True G90400
TU112472 other downstream 2436768 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 4700506 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 4946407 105685 ~ 105885 (-) True G89804
TU112828 other upstream 91072 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 91072 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 155161 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 1319940 6387252 ~ 6389038 (-) True G90715
TU113210 other upstream 1821410 6888722 ~ 6914790 (-) False G90746

Expression Profile