RNA id: AMCG00017459


Basic Information

Item Value
RNA id AMCG00017459
length 537
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00017459
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5208933 ~ 5209817 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGATCTAAATCCACAGTGAAGGTGGTGGATTCAGCACACCTCACGGGAAACCGAGTCTTTGCTGTCCCTTTAGGCAGCATTGCAGATGCCCAACTCTCCCCGGAAGGCCTTCCACTGGTTTTTATAACCATGGTGGAGTACTTGGAGAAGCATGGCCTCCAAGAGGAAGGGCTTTTCCGAGTCAGTGGGTCGATGGCCAGAGTGAGGCTCATCAAGACCAAGCTCGACTGTGGGGCGCCAGTCGACCTGGACATGGAGGGGGGCGTCTCCGTCGTCGCTTCGGTCTTCAAGCTGTTCCTGAGGGAACTCCCCGTGGCGCTCATTCCCGACCACTTGGGCCTGGTCAACACCTTCAAAGCAAGTACAGATGAGGCAGAACTGAGCAGCTGCCTACAGGCTGAGCTGGACAGTCTGCCGGCAGAGCACCTGCGTCTGCTCAGCAGCCTCGTGCAATTCCTGGCCCGAGTGGCGTCTTATTGCAAGAGCAATAAGATGACGGAGCAGAACCTGGGGATAGTTTTCGGCCCCTGCATTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112750 lncRNA downstream 271767 4929386 ~ 4937166 (-) True G90443
TU112709 lncRNA downstream 543766 4662836 ~ 4665167 (-) True G90411
TU112634 lncRNA downstream 818443 4384583 ~ 4390490 (-) True G90345
TU112644 lncRNA downstream 860621 4348094 ~ 4348312 (-) True G90355
TU112643 lncRNA downstream 861642 4346986 ~ 4347291 (-) True G90354
TU112856 lncRNA upstream 46272 5256089 ~ 5256406 (-) True G90520
TU112880 lncRNA upstream 145445 5355262 ~ 5356316 (-) True G90540
TU113031 lncRNA upstream 467082 5676899 ~ 5677249 (-) True G90648
TU113053 lncRNA upstream 570063 5779880 ~ 5780526 (-) True G90670
TU113105 lncRNA upstream 1181068 6390885 ~ 6391229 (-) True G90716
AMCG00017458 mRNA downstream 141621 5052292 ~ 5067312 (-) True AMCG00017458
AMCG00017460 mRNA downstream 198831 4970408 ~ 5010102 (-) True AMCG00017460
AMCG00017455 mRNA downstream 294854 4906814 ~ 4914079 (-) True AMCG00017455
AMCG00017452 mRNA downstream 324584 4876511 ~ 4884349 (-) True AMCG00017452
AMCG00017453 mRNA downstream 346956 4692133 ~ 4861977 (-) True AMCG00017453
AMCG00017466 mRNA upstream 195027 5404844 ~ 5425674 (-) True AMCG00017466
AMCG00017467 mRNA upstream 251248 5461065 ~ 5465561 (-) True AMCG00017467
AMCG00017468 mRNA upstream 257243 5467060 ~ 5484458 (-) True AMCG00017468
AMCG00017469 mRNA upstream 281619 5491436 ~ 5520155 (-) True AMCG00017469
AMCG00017473 mRNA upstream 554753 5764570 ~ 5767143 (-) True AMCG00017473
TU112697 other downstream 664173 4542775 ~ 4544760 (-) True G90400
TU112472 other downstream 2593409 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 4857147 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 5103048 105685 ~ 105885 (-) True G89804
TU112836 other upstream 12656 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 1177435 6387252 ~ 6389038 (-) True G90715
TU113210 other upstream 1678905 6888722 ~ 6914790 (-) False G90746
TU113233 other upstream 1902619 7112436 ~ 7113181 (-) True G90749
TU113453 other upstream 2621068 7830885 ~ 7832592 (-) True G90937

Expression Profile