RNA id: AMCG00017460


Basic Information

Item Value
RNA id AMCG00017460
length 2718
RNA type mRNA
GC content 0.38
exon number 14
gene id AMCG00017460
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4970408 ~ 5010102 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTACATTCAGATGGAGTCAAGAGAACTTAAGATGGATTCAAATAAGAGGATTTTCAGCCTGCTTCAGCGTCACAGACTGGAGAAGTTTTATAATGGCTTCCTTGAGTTAGGTGTTGAAGATGAGAAAGACTTCAAAGATAGTGTTACGGAacaaaatttgaattacttgGACATGGATCCATCTATGAACACAGTGGAGGACCTTATGTTAAGAATTTGTCATCAGGAACATGTGGAACACAATAAAGCTGTCTGCCTGTACTCACAGGAAGGGATGCCTTTAACTGATGACCCTTTCTTCAACACGTGGAGTCTAAACGACAGGCAAATTGAAAATGGAAGTGAAATATATGCCATTTTTACACTCAAAGAAAACCTCACATCTACAGTTCAAGGAgcaaaacagatacaaataccAGACACTGGGGAAGACACCGTACGTTGCCATATTATGCTAAAGgGAGATTATGAAGTCCAGGTGGACCTCTCAAAAGACACCCTGAAGGTTCTGAAACAGAAGTTGTCTCGTGAAACAGGAATACCCTATACAGTGCTGCAAGCCAGCCTTCGTGATGTTAGAAGTGACCAGATCATCCGCACCACTAGAATGCCTAAAGAAGCAATActgGTAATCATGGATTCGAGTTCTTCAATGCAGGATGAATGCTATGATAAAGtaaccaaaatgaaaagaatTGATGCTGTCAAACAACTGTTCCATGCCTTTGCTAATAGGAGTATGGCATATGACTTTAAACATGTGATTGGTCTCATGAGAGTCGGAGGAAAAGCAACAATCCTCCATACTTTCACAGAAACTATGGAGACATTCAAGGAATACATAAATAGTCTTAAGTCTTCTGGAAATACTCCTCTTTATGATGGCTTGGACTTTGGCATTTCAGAGCTAGGAAAGATCAAAGAACAATTTCCTGACTGCAAACTACGGATTTTATGTCTCACAGATGGACAGGACGTGGGttCAGTGAGTGACCCTGTGAATGTTGCTGCCAAACTAATCAGTTCTAACATAGTTGTTGATGCCATCATTGTTGGAACTGTGGAAAACTATGTACTACATGGGATTACAAATGTGACTGGTGGCTGCTGTTTCAAACCTTCAACGAGTAAAGATGccttgaaaatatttgaaatggaaactgtCTTATCTCTGGAGTGCAGGAAGGTTAAGAAGAAATATGAAGCATCATCCATCCAGAGGCTGATTTACCACTGCAATGTGAATAGTGTGGGACGTATCTGTCACAACATATTTGATCGCAATTATTCTGCCCATGTAACTATGAGAAACATCCTGGAAGCTGTGTACGGCCTTTTGATTGCACCTGAGCCTGACGATCCATTGGACAGCATCCTGGCTGAGGAATACCAGAGCAGCAGAGGGAAATACCTTGAAGAGGCTAAAAACAGCACAACTACTCATGCCAGCACATCTTTGGAAGACATGGAAAAGACATTGCTGGGCATGGACTTGAAAGATGAACCTGGACCTTCACATTTGATTTGTAGGCTTACAGGAAAGATGTTCATTGATCCGGTGGAAACCCCTTCTGGAAATGTTTATGAGCGCCGTGCTATTGAAAACCACCTGAAAACGAAAGCCACAGATCCATCAAATAATAAGCCTCTACATCAAGCTGAACTGAAATCAAGCTTAGACATGAAAAAAATGGTGGAAACCTACAGAAAGCGCCAAATTCAAGAAACTGctgtataaatcaatacatgtcATATGAGGCACACTTATTCCAAAGAACATAAGCAGATGAAGTTTTATgtccaattaaacaaatgtttaaaataagataGATTTTTAATACTCTAGTTCCATAGTTTAGATTTTATGtaatgggtttattttattgttcaaaataacataacatttgtaaaataatttggaaatgcaTAATTTAGAATTAAACAGCAGTAGATTTTTAGTCAGAAAGGATGTATTGCTTTATGTCAAAAATATCTACCAAttatcaatgtaaaataattgtatatgctgttaaatacataatgtaatCTCATGATTACCCCTGTTAAACTGCCTGAGGAGGAGGAATATCTGTGTCAAAATGAGCAAGATGTGAACTGGTGATACAAAGATTAAGAAATAGTTATTTGGTACCATAAAACTCTTTCTTATAATATTAAGCTTCACAATATATAATCTTATAATAATACGTAGACCTACTGTGTTTTATAAGTAATAGAGAGGCctacaatatatattcaaacCAGCCTTTCAGTAACATAATTCACTCAATTGCCTGGTTAATGAATCAAGATTAACATAATTTTTGGACACTGATTGAAAATATATGATGGACTTACCTTGGCATCTTGGCTGTATCTCTTCTTCTGTGTGCACTGCCCAATAATTCTCCTCCTTTGCCCAGCAACTAAGGATCTTCAGGACAGCAGCATCTCTGAGCATGCCTGATCAAATCCCATCTGTTTGCATCTCACAAATCCCACAATCCATCACTGTGCTTTGCTGCCTATACACTTTCTCCACCAACACTACTATATACTAcagattaaacacattttttgtagtTCTGGGTTCCACTACTTGCTTACTATccaataatattgaaatattttcacTCATTTGCTGTAGTTGTATTGTATACAAGATTTAGGATTGTtaggaaatgctgctctgtggcTGGCTGGTCTCTcatgtgtga

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112750 lncRNA downstream 33242 4929386 ~ 4937166 (-) True G90443
TU112709 lncRNA downstream 305241 4662836 ~ 4665167 (-) True G90411
TU112634 lncRNA downstream 579918 4384583 ~ 4390490 (-) True G90345
TU112644 lncRNA downstream 622096 4348094 ~ 4348312 (-) True G90355
TU112643 lncRNA downstream 623117 4346986 ~ 4347291 (-) True G90354
TU112856 lncRNA upstream 245987 5256089 ~ 5256406 (-) True G90520
TU112880 lncRNA upstream 345160 5355262 ~ 5356316 (-) True G90540
TU113031 lncRNA upstream 666797 5676899 ~ 5677249 (-) True G90648
TU113053 lncRNA upstream 769778 5779880 ~ 5780526 (-) True G90670
TU113105 lncRNA upstream 1380783 6390885 ~ 6391229 (-) True G90716
AMCG00017455 mRNA downstream 56329 4906814 ~ 4914079 (-) True AMCG00017455
AMCG00017452 mRNA downstream 86059 4876511 ~ 4884349 (-) True AMCG00017452
AMCG00017453 mRNA downstream 108431 4692133 ~ 4861977 (-) True AMCG00017453
AMCG00017448 mRNA downstream 309250 4643696 ~ 4661158 (-) True AMCG00017448
AMCG00017447 mRNA downstream 350340 4601504 ~ 4620068 (-) True AMCG00017447
AMCG00017458 mRNA upstream 42190 5052292 ~ 5067312 (-) True AMCG00017458
AMCG00017459 mRNA upstream 198831 5208933 ~ 5209817 (-) True AMCG00017459
AMCG00017466 mRNA upstream 394742 5404844 ~ 5425674 (-) True AMCG00017466
AMCG00017467 mRNA upstream 450963 5461065 ~ 5465561 (-) True AMCG00017467
AMCG00017468 mRNA upstream 456958 5467060 ~ 5484458 (-) True AMCG00017468
TU112697 other downstream 425648 4542775 ~ 4544760 (-) True G90400
TU112472 other downstream 2354884 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 4618622 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 4864523 105685 ~ 105885 (-) True G89804
TU112828 other upstream 148282 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 148282 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 212371 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 1377150 6387252 ~ 6389038 (-) True G90715
TU113210 other upstream 1878620 6888722 ~ 6914790 (-) False G90746

Expression Profile