RNA id: AMCG00017462


Basic Information

Item Value
RNA id AMCG00017462
length 1573
RNA type mRNA
GC content 0.39
exon number 2
gene id AMCG00017462
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5373357 ~ 5375454 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGAAAGCCTTGCTTAGTTAGCTGAATGCCTTCTTTGTGAAAGGAGGCTATATATAGTGGAGAGAACCAACACTCGGCCCCTTACACTCAGAGGCACTTTGGAAGCTGAACTCCCTTCCACTGCCACCTCAGCCAATATGAAGGCTTGGACCagctctgttttattctttgccTGCTGCCTGTGGGCTGTCAATGGACAGAGCAAGAAAAGCAGTGCGGAAGAGCAATTCCGCTTCAACACCAAGAGCAAAGATGCCTGTGTTATGACAGTGagcggagagggagagatgaagCTCCGGATTGTGTGTAAAAACCAGGGCAAGTCTTACTGGTGTGAGTACACCGGCAAGCCGTCTGTGTGCCGCTCTTTCAACGCCAACCCCAAGCAGTACTGGAACCAGATCAGTATGGAGCGGAGGAAAACTACCAACGCCTGCCAAGGGGCCATGATCCTAAAGCCAAGCATGTGTCAGAAGGCTCCTGTAGATGCGCACATGAAGCAAATAGCTGCTGGCCCTAAGCTGGTTATGCAGAAGCCTACCCAGTCAAAATCAGCAGCTAAAGTAACCCCAGCAAGAAAAACTCCATCCAAACCAACACCAACAACCAGCACTGAGCAAAACGCTGACAGGATGGCACAAGAACATTGCTGGGAATCGCTACACGATGTTTGTGCTTATATCTTCGACTTCTTCCAGGGTTTAAATTGACATCTGGAACATCCAGCAAATCCTGAAGTCTGCTGGTTTTCACAACTTGGATTCAGACTATTTTCTGGATGgtagatttaaaaaatcctgTACGAAGAATTCAAAAGTTCCGactttttacaatttaaaatcttaGAATGTTTTATTCTAGCTGTGAAAGAAATCCATGTCCtgttaattttacaaaacaataatgtctTATGTAACTTGAATTAAACTGTTCTTTTGATTAGTATTTCCTTTTATAATGTGTTGATTGCAGTCCAAGCCAAAGACAGTATGCTcttttgtaatacattataGCAGTGTGGGAGCAGGTACAGATAAAGTTATAGATATAGTTATTCTAATGCACTAACGTTACCTGAAGGTTTACTACATATTCTATTAACTTTAAAATCAATGATATACATGTTTCCTGTGTTTTCTGGATCATATAATTTGAACTGAAACCTGACTTTTGTGACTTGAtgtttttgtgcttcttcagCCAATGCCCTTTCCCCCATCTCTGTCTCTTCTGTAGATTTGTTGTATGACTGTATGaattgttattttgctttttgttattgtaaGGAAGATGTGCCCACCTTAACTGATGCTTAGTGATAAGATTACATTTTGTCTGCCccattcttaaaataaatccatcaagATTGGTGTGTTTATTTCGCATTttcagtgatatatatatatatatatatatatatatatataggtgtaATACAACTACAGTTTAATTCATGAAGAAGCACTGCAAActgtactttaaatatattgattttccaTTCTTCATCTACttattgtgttaaatgttgtctgtgcattttgtgtatagataattatattatataagcGTTAAC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112790 lncRNA upstream 150605 5091668 ~ 5222752 (+) False G90477
TU112794 lncRNA upstream 150605 5128787 ~ 5222752 (+) False G90477
TU112788 lncRNA upstream 234582 5091668 ~ 5138775 (+) True G90477
TU112786 lncRNA upstream 274470 5088593 ~ 5098887 (+) True G90475
TU112743 lncRNA upstream 462565 4901022 ~ 4910792 (+) True G90436
TU112894 lncRNA downstream 29988 5405442 ~ 5407529 (+) True G90551
TU112895 lncRNA downstream 32194 5407648 ~ 5412689 (+) True G90552
TU112898 lncRNA downstream 36277 5411731 ~ 5412261 (+) True G90554
TU112908 lncRNA downstream 64758 5440212 ~ 5463064 (+) False G90561
TU112907 lncRNA downstream 85813 5461267 ~ 5463064 (+) True G90561
AMCG00017463 mRNA upstream 2715 5355762 ~ 5370642 (+) True AMCG00017463
AMCG00017464 mRNA upstream 21532 5330756 ~ 5351825 (+) True AMCG00017464
AMCG00017456 mRNA upstream 100670 5232468 ~ 5272687 (+) True AMCG00017456
AMCG00017457 mRNA upstream 325115 5009181 ~ 5048242 (+) True AMCG00017457
AMCG00017454 mRNA upstream 472694 4884961 ~ 4900663 (+) True AMCG00017454
AMCG00017465 mRNA downstream 3005 5378459 ~ 5379148 (+) True AMCG00017465
AMCG00017461 mRNA downstream 49977 5425431 ~ 5459702 (+) True AMCG00017461
AMCG00017470 mRNA downstream 163058 5538512 ~ 5624154 (+) True AMCG00017470
AMCG00017471 mRNA downstream 249570 5625024 ~ 5640242 (+) True AMCG00017471
AMCG00017474 mRNA downstream 404426 5779880 ~ 5792505 (+) True AMCG00017474
TU112690 other upstream 705527 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 2677904 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 2677904 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 5161421 207586 ~ 211936 (+) True AMCG00017388
TU111993 other upstream 5274974 93120 ~ 98383 (+) True AMCG00017386
TU113125 other downstream 1354284 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 1354284 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 1354284 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 1354284 6729738 ~ 7184790 (+) False AMCG00017486
TU113139 other downstream 1429290 6804744 ~ 7184790 (+) False AMCG00017486

Expression Profile