RNA id: AMCG00017464


Basic Information

Item Value
RNA id AMCG00017464
length 1326
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00017464
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5330756 ~ 5351825 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCATCTACTATGAAATCGGTTTCATTGTGTGTGCCTCTCTGGGAGTTCTGTTTGTTCTTTTGATGCCTCTTGTGGGGCTATGCTTCTGCATGTGTCGTTGCTGTGACAACTGCGGAGGGGAGATGCACCAGAGACAGAAGAAGAACGCTGACTGCCGGAGAGGCTGCTTAACAACGCTCCTCTTCACCACATCTCTCGTCATCTCAGCGGGTGTGTTGTGTGCATATGCTGCTAATCAGAATATAAGCAATCAGCTCAGGGGAGTTAAGAAACTGGTCAACAGCAACTTCAGAGATCTGAAAACGCTGGTCAACGATACACCATCGGTAAGGATTTTCATGTGCCAGATTTCTAATCTAAATTTGTTTAATATTGGCCCTTTGCTGGGCAAGAGGATTCATGATCAATTGGGAAAGGAAGTTCGGCCCGCCCTGGATGGGGCGTTGAACATGGCTGGAGCAATGAGGGAAACCAAGGAAGCTCTGGAGAACGTCAGTGTGTCCCTGGAGATCCTGCAGGATGGCACCAGCAAGCTGCAGGTGAACCTGAGCAACGTGAGGAACAGTCTGAGCAACACCCTGAACGACCCGGCTTGCTCCGCCCCGGGCGTCTCCAACACCTGCAACGCCATCCGCAATACGTTGGGCCAACTTGCCATCAGTGCCAACTTCACTGCGttgccTGATGTGAACACCCAATTGAATAATGTGAATGATGTACTCAAAACTGACCTCAGCAACATTGTTCAGAAGGGATATTCAACATTTAATAACACCCCAGGCATGGTAAAGAACCAAACAAAGAATGTTGTTGCAGGGATCAAAGGGATGCTGGACAGCATAGGATCCAATATCACCGGCTTTTCCAAGCACTTGCCTATCCAGAGCATTCTGTCCAACGTCACCCTGTACATCAACCAAGGCCAGTCAATGATTGAGGACTACTACCCCTTGATCGATGACTATGACTTCTACAGGTGGATTGGGTGCATTGTGGTGTGTTGCATGGTGGTGCTCATACTTGCCTTCAACTTTTTGGGCCTGCTTTGTGGCTCCTGTGGATATGACAAGCACTCTTCTCCAACTACCAGGGGCTGTGTCTCCAACACTGGGGGCAACCTGCTCATGGCTGGTGTGGGGTTCAGTTTCATCTTCTCCTGGTTGCTGATGCTGGTGGTCTGTATCACTTTCACCATTGGGGGAAATCTACAGAAGCTTGTGCTGGACACTCCTTATTTAATCACTCCTTACTGGAAGAACTCCATCCCTGGCTTTCTGTATCAGAACTCTGAGATAGATCTCACCATTGAGAAAGTTTACAGGTAA

Function

GO: NA

KEGG:

id description
K06532 PROM1, CD133; prominin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112790 lncRNA upstream 108004 5091668 ~ 5222752 (+) False G90477
TU112794 lncRNA upstream 108004 5128787 ~ 5222752 (+) False G90477
TU112788 lncRNA upstream 191981 5091668 ~ 5138775 (+) True G90477
TU112786 lncRNA upstream 231869 5088593 ~ 5098887 (+) True G90475
TU112743 lncRNA upstream 419964 4901022 ~ 4910792 (+) True G90436
TU112894 lncRNA downstream 53617 5405442 ~ 5407529 (+) True G90551
TU112895 lncRNA downstream 55823 5407648 ~ 5412689 (+) True G90552
TU112898 lncRNA downstream 59906 5411731 ~ 5412261 (+) True G90554
TU112908 lncRNA downstream 88387 5440212 ~ 5463064 (+) False G90561
TU112907 lncRNA downstream 109442 5461267 ~ 5463064 (+) True G90561
AMCG00017456 mRNA upstream 58069 5232468 ~ 5272687 (+) True AMCG00017456
AMCG00017457 mRNA upstream 282514 5009181 ~ 5048242 (+) True AMCG00017457
AMCG00017454 mRNA upstream 430093 4884961 ~ 4900663 (+) True AMCG00017454
AMCG00017451 mRNA upstream 462286 4861374 ~ 4868470 (+) True AMCG00017451
AMCG00017450 mRNA upstream 638801 4689878 ~ 4691955 (+) True AMCG00017450
AMCG00017463 mRNA downstream 3937 5355762 ~ 5370642 (+) True AMCG00017463
AMCG00017462 mRNA downstream 21532 5373357 ~ 5375454 (+) True AMCG00017462
AMCG00017465 mRNA downstream 26634 5378459 ~ 5379148 (+) True AMCG00017465
AMCG00017461 mRNA downstream 73606 5425431 ~ 5459702 (+) True AMCG00017461
AMCG00017470 mRNA downstream 186687 5538512 ~ 5624154 (+) True AMCG00017470
TU112690 other upstream 662926 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 2635303 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 2635303 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 5118820 207586 ~ 211936 (+) True AMCG00017388
TU111993 other upstream 5232373 93120 ~ 98383 (+) True AMCG00017386
TU113125 other downstream 1377913 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 1377913 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 1377913 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 1377913 6729738 ~ 7184790 (+) False AMCG00017486
TU113139 other downstream 1452919 6804744 ~ 7184790 (+) False AMCG00017486

Expression Profile