RNA id: AMCG00017466


Basic Information

Item Value
RNA id AMCG00017466
length 2396
RNA type mRNA
GC content 0.41
exon number 13
gene id AMCG00017466
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5404844 ~ 5425674 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAGGAGTGCATAATGGCTTTAGCCTGTGAATGTAGATTAGCTGCCCTGCGAGCTCCTTAAATGGATACTgctcaaaacattacaaagtgcgcaagaaaacaattaatcaattacacaCTGGACAAGTATTTGCAACCAAGAGGAAAATGTATCCATTCCAAAGAAGGGGGCGGGGAGAGAGACCCCACAGGTAACATTTCAGGTAGCACCTGCTTTCGCCCAGCATCGGCCTCAAACCACATTTCCCAGAGTGCATTGGTTTTGCACACGGTTTCTCGTGTCTTTCCTCTTTTTCCTGTGTGCTGGGTGTGGTGCTCGACGACACAGAGACTTCTCTCCATTCAGCCGGAGTTCCTCAGTCAGCTGTCCTGTCTCGCCTGCGGAGGTCCTGTGCACAAGTTCAGTTCATTTTGCTTGAATAACTCCACAATACAGCAGCTGCAACAATGgcTTCCGGAGGCACCGTAAAACCCTATCCCCAGTTTGATGCAAATGCAGATGCACAGACCCTGTACAAGGCAATGAAAGGACTGGGGACTGATGAGGAAACCATCCTGAAGCTCCTGACTGCCCGCAGCAATGCTCAACGGCAGCAAATTGCACTTGCTTACAAGACGCTGCACGGAAAGGACCTGATTGGGGATTTAAAATCAGAACTCGGAGGGAAGTTTGAGACTCTTGTTGTTGGTCTGATGACTCCTCCAGTTCTTTATGATGTTCATGAACTCAGGAGTGCGATTAAGGGTGCTGGGACTGATGAGAAGGTGCTGGTAGAGATTCTGGCCTCTAGGACACCCAAGCAGGTCAAAGAAATCATTGCAGCATACAAAAAGGAGCATAATGCTGATCTTGAGGCAGATGTTACTGGAGATACCTCGGGGCATTTCCAGAGGATGTTGGTGGTTCTGCTGCAGGCAGGTAGACAGCAAGGAATTGATGCTGGAAAAATTGAACAAGATGCTCAGgACTTGTTTGctgctggggaaaaaaaatatggcACTGATGAAGACACGTTCATCACCATCCTGGGGAACAGAAGCGCTGAACACCTCAGGAAAGTCTTTGAAAAGTACATGACAATTTCTGGTTTTGAGATTGAAGAAAGCATCGAAAGAGAAACCTCAGGGGGGCTGAAAAGTGTGCTATTGGCTGTTGTGAAATGTGCCAGGAGTGTTCCAGCATACTTTGCTGAAAGCCTCTACTTTGCAATGAAGGGAGCTGGGACTGATGACAAGACTCTGATCCGGATCATGGTGTCCAGAAGTGAAGTGGACATGCTAGACATCAGAGCACAGTTCAGGAAAATGTTTGCAACATCTCTTCATTCAGTGattcagGGTGATACATCTGGTGACTATAGGAagaccctcctcctcctctgtggtGGGAACGACGCATAACAATACCGTATGAAGGAGCGCTCTGCTGTGCTTTTCTATCTGCACTTGTTTAATAATACTAAATGCATACAGCTTGCACAACTGAAGGACCAAAGTGCGACATAAtgctcagtttgtttttcattttaatacttgcTTTGCAGTGGTCATTAAGCATTAGTTAGTTACAGTTTGATATTCTATTCATGTATTTGGATTGTACTAAAAGCTATCAGTGACTTTGTACTCCAGAAAGCATGTTCTTTAGAAGTGGTTATTCAGAGCTTTGACCTGTGCCTTTAAACCTGTCTTAAGCTGTATCAAGACATTTTATTCTCGGTCAATATCAGTCAATTGTTGTCTTTATTCACCATggtccatttaaaatgttatgttaactTAGGACAGTAACACCACAACttaataaaaatggtttccataaaaaactgtttttgtgGTTGAATGTGTTTGGTATAACAATAGCAACTACATGTCAAATCGAGAAAAGAAAACTTGAGGTATAAAGTGCATAAACATAACTTTTAAATAGCCAGCAGAAATTGTCCTGAATTTATTTGAggacaaatgtttaaatacaatttttaaattagcattttGCTTAATATGAGGTTAATAcgtttttatgtattatgtttgttagttttgccacagattatacatttttataatttgcaataggtatgtaaacatttaaatcatagCTATGCACAACACATTCATGACAATCTCCTTATTCTTTACTGTGACATTAGGCGCATTTACACTGACCTGCTCAAGCTTCTGCATGCACTGTGGCGGTGTGTGTTTTAGAGGCAGGGGGCAGACAGCATCGCTTCCCTACTgcccatattataaatataatactgtTAAAATTTACACTAAATGACTTATTTCATGTTACCAAAAAtatatcattgtatttttattttcaatgctttggtAGTGAAATAATATGGAAATGCGTtagttttacttgttttaatatttgtaacgA

Function

GO:

id name namespace
GO:2000145 regulation of cell motility biological_process
GO:0050819 negative regulation of coagulation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG:

id description
K16646 ANXA5; annexin A5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112880 lncRNA downstream 48528 5355262 ~ 5356316 (-) True G90540
TU112856 lncRNA downstream 148438 5256089 ~ 5256406 (-) True G90520
TU112750 lncRNA downstream 467678 4929386 ~ 4937166 (-) True G90443
TU112709 lncRNA downstream 739677 4662836 ~ 4665167 (-) True G90411
TU112634 lncRNA downstream 1014354 4384583 ~ 4390490 (-) True G90345
TU113031 lncRNA upstream 251225 5676899 ~ 5677249 (-) True G90648
TU113053 lncRNA upstream 354206 5779880 ~ 5780526 (-) True G90670
TU113105 lncRNA upstream 965211 6390885 ~ 6391229 (-) True G90716
TU113106 lncRNA upstream 969974 6395648 ~ 6395865 (-) True G90717
TU113107 lncRNA upstream 970954 6396628 ~ 6396891 (-) True G90718
AMCG00017459 mRNA downstream 195027 5208933 ~ 5209817 (-) True AMCG00017459
AMCG00017458 mRNA downstream 337532 5052292 ~ 5067312 (-) True AMCG00017458
AMCG00017460 mRNA downstream 394742 4970408 ~ 5010102 (-) True AMCG00017460
AMCG00017455 mRNA downstream 490765 4906814 ~ 4914079 (-) True AMCG00017455
AMCG00017452 mRNA downstream 520495 4876511 ~ 4884349 (-) True AMCG00017452
AMCG00017467 mRNA upstream 35391 5461065 ~ 5465561 (-) True AMCG00017467
AMCG00017468 mRNA upstream 41386 5467060 ~ 5484458 (-) True AMCG00017468
AMCG00017469 mRNA upstream 65762 5491436 ~ 5520155 (-) True AMCG00017469
AMCG00017473 mRNA upstream 338896 5764570 ~ 5767143 (-) True AMCG00017473
AMCG00017472 mRNA upstream 365174 5790848 ~ 5808491 (-) True AMCG00017472
TU112836 other downstream 181797 5222473 ~ 5223047 (-) True G90502
TU112828 other downstream 183823 5158384 ~ 5221021 (-) False G90501
TU112835 other downstream 183823 5158384 ~ 5221021 (-) True G90501
TU112697 other downstream 860084 4542775 ~ 4544760 (-) True G90400
TU112472 other downstream 2789320 2608689 ~ 2615524 (-) False AMCG00017418
TU113104 other upstream 961578 6387252 ~ 6389038 (-) True G90715
TU113210 other upstream 1463048 6888722 ~ 6914790 (-) False G90746
TU113233 other upstream 1686762 7112436 ~ 7113181 (-) True G90749
TU113453 other upstream 2405211 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 2566463 7992137 ~ 7996595 (-) True G90939

Expression Profile