RNA id: AMCG00017467


Basic Information

Item Value
RNA id AMCG00017467
length 2250
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00017467
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5461065 ~ 5465561 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTGGATTAGCCGGCCGCCGTAGTTTGGTGACGTACATGCCCTCTCGGCTGCGATTGGATGATTTCAATAGTCGCGGGCTACTTGAACGGGGAGAGCAGCAGTTTAGCAACTGCAGGAACTGAGAGAAACAAAGTGCGATCCGCTCAGGCATTAGCAACTACGACAGCAACACACGAAAGGCGGGATGGAGAGCTGAGACTGGGTTTTAGGAGACGCGGTTGTGCCGCACTGTTGCTTTAGAGGACTTAAGCCCTGGTGTTGCTAgcgggtttttttgttttgttttgttgagtgCATATTTACGATTTAAACGTAACTGGTTTAACTGAGATCTTAGATCACTGTTGTAACATTTTAGATCTGTGGTTTTACTGGTTCggaaaaaatgaataacttgCTAAGAGAGCAGAACCAGGAGAACATGCATCCGAGGCAAAGGACGGCTGTAAAAGATGCGCTTGAAAACCAGGAGAACATCAACCCCAGGGCGCCGGGCCGGGCGGTGCTGGGCGTCCTGCAGCACAACCAGCGCAGCAGGCCGCACTTGCAGCGCAGCACCAAACAGAGCTATACCTCACAAGGGTTGTCCTGCACAAATGATGAGAACTATGTCAAGGGTCCTGCGGAGAAAGGGGCAGTCAAAGCGCCTGCGTTTGCCATCCATGTGGATGAGCCCGATGGTGCTTGCACAAAGAAGCAAGTGgccaccaaaacaaaatgcctcGCCGAGAAGCCCCTGCTCACCCTAAACCCATCTGTAACGTGTCTGGGAAACCGGCAGCCACTGTCCACGCTCGAATGTTCCATGGATGTTAGTTTTGATTCCCCAATGGTTTTGGATATGTCAGTTTCCGAAACGGAGGAAAAGCCACTGAATGTTAATAAAGTACCAGACTATGCTGTAGACATCTTCAAGTATTTAAGGGAAATGGAGCTGAAGACCAGGCCAAAAGCAGGGTACATGAAGAAACAGCCCGACATCACAAACAGCATGCGGGCTATTCTTGTGGACTGGTTGGTTGAGGTGGGAGAAGAGTACACGCTCCAGAACGAGACGCTCTACCTGGCTGTAAACTACATTGACAGGTTTCTCTCGTCGATGTCGGTGCTCCGAGGAAAGCTGCAGCTCGTTGGCACGGCAGCCATGCTTTTGGCTTCgaAATTTGAAGAGATCTACCCTCCAGAAGTGGCCGAGTTTGTCTACATTGCAGATGATACGTACACTAAGAAGCAGGTGTTGAGGATGGAGCATCTCATTTTGAAAGTCTTGTCGTTTGATCTTGCCGCCCCTACGATAAGCCAGTTTCTCTCTCAATACTTCCTGCATCAGAAGGTGAATCCCAAGGTTGAGAGTTTGTCAATGTTCCTGGGGGAGCTGAGTTTAGTTGACTCCGACCCTTTCCTGAAGTACCTTCCGTCGGTCCTAGCAGCTGCAGCCTTTGCTTTGGCAAACTTCACCATTACAGGAGGCTCATGGGGGAAGTCGTTGGTGGAGTTGACTGGGTACACAGTGGAGAGTCTCTTGCCTTGTATAAACGACCTGCATGAAACCTACCTCACTGCTCCGAAACATGCACAACAGTCTGTGAGGGAGAAATACAAGGGTTCAAAGTATCATGAAGTCTCTGCCGTTGAGCCACCCGAGAAACTGACCCTGGTGTAAATAttgcagttttaaatgtataccatGGAgagacttttctgtacttttatttttttatacacgTCACTACTATGACCAGAATAATTCGGTAACTGAATGCCACAGGTGTTTCGATGGTAAACatgaatgggatttttttttattaaatgtgcaaTCTTGTATGGTTATTTTTGCTTGATGCAACTTTTGTAACCTAGTTAATCAGGCATTGTTTTAACTGCTAAAGTGTTCCCGTTGATGCCCTTGCTTTTGGGAGATCTCGCAGgggttgtttttaatctgttgtcaatttgtacattttaaatcttcagTAATAAAACTATTGCTGCCGTGACTTTTCCCAATTTTGTTTGGTCATCTGCAGTTCAAAGCTTCTTTTGGAAAGTGTACTTTGACTTCATTTTTAGTTCACTTGAGTCTAATCTAGGCAGCCTTTATTTCACAAGGAGTATTCGTTAAGGCCTTTAAAGTCTGTGGTTtggtgaatacatttgaaccatctacataaaaaatatataacacgGTGACACTCCATGATTTAAAGCTAGTCTAAACTGTAGACGCATGTGTTGCATTATTGATCTG

Function

GO: NA

KEGG:

id description
K06627 CCNA; cyclin-A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112880 lncRNA downstream 104749 5355262 ~ 5356316 (-) True G90540
TU112856 lncRNA downstream 204659 5256089 ~ 5256406 (-) True G90520
TU112750 lncRNA downstream 523899 4929386 ~ 4937166 (-) True G90443
TU112709 lncRNA downstream 795898 4662836 ~ 4665167 (-) True G90411
TU112634 lncRNA downstream 1070575 4384583 ~ 4390490 (-) True G90345
TU113031 lncRNA upstream 211338 5676899 ~ 5677249 (-) True G90648
TU113053 lncRNA upstream 314319 5779880 ~ 5780526 (-) True G90670
TU113105 lncRNA upstream 925324 6390885 ~ 6391229 (-) True G90716
TU113106 lncRNA upstream 930087 6395648 ~ 6395865 (-) True G90717
TU113107 lncRNA upstream 931067 6396628 ~ 6396891 (-) True G90718
AMCG00017466 mRNA downstream 35391 5404844 ~ 5425674 (-) True AMCG00017466
AMCG00017459 mRNA downstream 251248 5208933 ~ 5209817 (-) True AMCG00017459
AMCG00017458 mRNA downstream 393753 5052292 ~ 5067312 (-) True AMCG00017458
AMCG00017460 mRNA downstream 450963 4970408 ~ 5010102 (-) True AMCG00017460
AMCG00017455 mRNA downstream 546986 4906814 ~ 4914079 (-) True AMCG00017455
AMCG00017468 mRNA upstream 1499 5467060 ~ 5484458 (-) True AMCG00017468
AMCG00017469 mRNA upstream 25875 5491436 ~ 5520155 (-) True AMCG00017469
AMCG00017473 mRNA upstream 299009 5764570 ~ 5767143 (-) True AMCG00017473
AMCG00017472 mRNA upstream 325287 5790848 ~ 5808491 (-) True AMCG00017472
AMCG00017476 mRNA upstream 716165 6181726 ~ 6211002 (-) True AMCG00017476
TU112836 other downstream 238018 5222473 ~ 5223047 (-) True G90502
TU112828 other downstream 240044 5158384 ~ 5221021 (-) False G90501
TU112835 other downstream 240044 5158384 ~ 5221021 (-) True G90501
TU112697 other downstream 916305 4542775 ~ 4544760 (-) True G90400
TU112472 other downstream 2845541 2608689 ~ 2615524 (-) False AMCG00017418
TU113104 other upstream 921691 6387252 ~ 6389038 (-) True G90715
TU113210 other upstream 1423161 6888722 ~ 6914790 (-) False G90746
TU113233 other upstream 1646875 7112436 ~ 7113181 (-) True G90749
TU113453 other upstream 2365324 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 2526576 7992137 ~ 7996595 (-) True G90939

Expression Profile