RNA id: AMCG00017468


Basic Information

Item Value
RNA id AMCG00017468
length 3015
RNA type mRNA
GC content 0.40
exon number 19
gene id AMCG00017468
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5467060 ~ 5484458 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGAATCATTTTGGATCCTAATCCTCTGAGTCCGACAGCATTTGTACAGTTATTGTAGCGAGTCACGTTTTCTGTGCAAATACACAAGTAATTTAGCATATTTGTACAGTTTGAAATAAAGCCTTTCggacgtttgttttgtttcttctgaacCCTTGAAGATGGAAATAAATTTGCATCGCAACGATTACCTTCAGGTTGGAGTTACATCCCAGAAGACAATGAGGCTCCTTCCAGCACTGGGTCGCAAAGCAACACAAAAGgTTGCAGTTGCAGATAATGATGGTGTAATAACGTGTTTTGGAATGAAAAAAGGTGAAGCAATTCCTGTCTTCAAGACTTTGCCAGGACAGAAGATCTCTAGGCTGGAGCTGGGTGGGGCTCTGGGAACACCCCAGGAGAAGATTTTTATTGCTgcagggtcagaggtcagaggatTCACAAAGAAGGGCAAAcagtttctttcatttgaagCTAACCTTACAGAAAGCATCAAGGCCATGTATATTTCAGGTGCAGATCTATTTGTTTGTGCAAGCTACATTTATAACCACTACTGTGACTGCAAGGACCAGGATTACTACCTGTCAGGGGACAAAATCAACGACATTATCTGCCTGCCAGTAGAAAACCTGGATCATATAGCTCCCGTGCTGGCATGCCAGGACAGAGTCCTCAGAGTATTACAGGGATCTGAACTTGTATATGAAGTTGAAGTTCCTGGACCTCCATCTGTCTTAGAGTTAAACAACAGAGATGGAGGCAGCCAAGGTGGAGAAGTTCTGTACGGCACATCTGATGGAAAGCTGGGACTGATTAGGATCACAGATACCTCTTCAGTTAATAAATGGGAAGTTGTAAATGAAAAGAAGAGGGGAGGTATTTTGTGCATTGATTCATTTGACATTCTTGGTGATGGAGTAAAAGAAATCCTTGTGGGCAGAGATGATGGAACAGTGGAAGTTTATGGGCTTGACAGTTCAAATGAGCCTGTACTACGTTTTGAACATacccTTTCAGAGAGTGTCACATCTATCCAAGGTGGTTGTGTTGGAAAGGAGTCTTATGAGGAGATCTTGGCAGCAACCTATACAGGCTGGGTGACTGGACTCACTTCAGAACCACAACAGAGGGAAGTGGGGCCTGGAGAGGAAATAAAGATGAGTCGAGAGACACAGAACAAAATTGCCGTACTCAGGGCTGATCTGGAGCAGCTGCAGATGAAGGTGCTTCAGGAGCGTGAGAAATACCAGCAGTCTTCACAGTCCAGCAAGGCTGTGTCTACTGTGCCAACCTTCAGCGTCAACGACAAGTTCACTCTCTGCCAGGAGGATGCCAGCTACAGCCTCACTCTGGAGGTGCAGACAGCCATCGACAATTTGCTTCTGCAGAGCGATGTTCCAATAGACTTGCTGGATGTAGATAAAAACTCTGCAGTTGTCAGTTTCAGCGAATGTGATTCATCTGAGCCAAATGGTAACTTTCTTCTTGCTACATATCGATGCCAGGCAAACACTACAAGGCTTGAGCTTAAGGTCCGATCCATTGAAGGCCAGTATGGCATTCTGCAGGCATATATAACTCCACGTCTGCAACCAAAAACCTGTCAGGTCCGCCAGTATCAAATCAAACCCTTGTATCTTCATCAAAGAACACATTCCATTGAGCATGATCGGCCAATGAACACTCTGACTCTCACAGGACAGTTCAGCTTTGCAGAGATTCATTCATGGGTAGTTTTCTGTCTCCCTGACGTTCCTGAAAAGACACCTGCAGGAGACAGTGTTACTTTCTACTTTCAGAACACTTTCCTCAGCACACAGCTTGAATGCACATACAGTAAAGGCCAAGGGAACTTTAAATCAGACAACATCTCTACAATATCTATTCTCAAGGATGTCCTTTCCAAAGAAGcaaccaaaagaaaaatgaaccTCAACATTTCGTATGacatCAATGAAGACTCTGTAAATCACACTTTGAAGATGATCCATCCGAAGCTGGAATACCAGCTGCTCTTGGCCAAAAAGGTTCAGCTAATTGATGCTTTAAAAGAGCTGCAGGTTCACGAGGGGAACGTTGACTTCTTAATCCCAGAGTATCGCAGTATTCTGGAAGAAGCCAGCCACCTACTTgaggaatacaaaaaacagcCAGCACATTTAGAAAGATTGTACGGTATGATTACAGATCTCTTCATtgacaaattcaaattcaagggACAGAATGTGAAATCCAAGGTTTCATTGCTGCTTGAGATTTTGGACAACTATGATCTTAATTCTTTAATGGGATTCTTTGATTCAACTTAAGGCTGATATAAATAATGATCTAATCCACTATAATTctatatgtgtatgtaatttGCTATACATGTGCTTTCCTCATGTTATAGAGATTGTCAGATGTCATTACAGGATGATTTGGTCATGTGAAAACACTAGTTGAACACTTTGATAAAAGAGAATAGATCATTTTATATGATGGGCATTTCCATAGTGTGTTtacttcagatttgtaaatgatGTATCATAGTTCAAAATAGCATTGTAAATTAgtttacataatataatatgtaaaaagtattttaagctttctgttattttataaaAGTGCAGTTGATACAATGGTTGTTTAAAGACTGCACTTCAcaaggaatttaaaatatatgttacaaTAAACAGACATTCCAACAATAAATTATTCTGGATGTTGTTTATCAGCCATAGCAATCTGACCAATGATATGGTaatgtttacttaaaaaaagGTGCAAGGTTTATTCTACATGCTTTTTTGTATTGCAGTACATAAATCCATTTATGTGTATCCAAATGACATCTGTCTGTATTTGTTGGACCTGTGTATCTGATGTTCATAAGTTACTTTTGTGatatttaaacattgaaatagaaaataaaaaacaaacagaacaaaactcaTTACAGCTTCAATTTACTTGACTTCTACCATCACACAAGCAATTCTATTCTGgataaataaattgctttcaAA

Function

GO:

id name namespace
GO:0046907 intracellular transport biological_process
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0051877 pigment granule aggregation in cell center biological_process
GO:0033339 pectoral fin development biological_process
GO:0001947 heart looping biological_process
GO:0034464 BBSome cellular_component
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K16749 BBS7; Bardet-Biedl syndrome 7 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112880 lncRNA downstream 110744 5355262 ~ 5356316 (-) True G90540
TU112856 lncRNA downstream 210654 5256089 ~ 5256406 (-) True G90520
TU112750 lncRNA downstream 529894 4929386 ~ 4937166 (-) True G90443
TU112709 lncRNA downstream 801893 4662836 ~ 4665167 (-) True G90411
TU112634 lncRNA downstream 1076570 4384583 ~ 4390490 (-) True G90345
TU113031 lncRNA upstream 192441 5676899 ~ 5677249 (-) True G90648
TU113053 lncRNA upstream 295422 5779880 ~ 5780526 (-) True G90670
TU113105 lncRNA upstream 906427 6390885 ~ 6391229 (-) True G90716
TU113106 lncRNA upstream 911190 6395648 ~ 6395865 (-) True G90717
TU113107 lncRNA upstream 912170 6396628 ~ 6396891 (-) True G90718
AMCG00017467 mRNA downstream 1499 5461065 ~ 5465561 (-) True AMCG00017467
AMCG00017466 mRNA downstream 41386 5404844 ~ 5425674 (-) True AMCG00017466
AMCG00017459 mRNA downstream 257243 5208933 ~ 5209817 (-) True AMCG00017459
AMCG00017458 mRNA downstream 399748 5052292 ~ 5067312 (-) True AMCG00017458
AMCG00017460 mRNA downstream 456958 4970408 ~ 5010102 (-) True AMCG00017460
AMCG00017469 mRNA upstream 6978 5491436 ~ 5520155 (-) True AMCG00017469
AMCG00017473 mRNA upstream 280112 5764570 ~ 5767143 (-) True AMCG00017473
AMCG00017472 mRNA upstream 306390 5790848 ~ 5808491 (-) True AMCG00017472
AMCG00017476 mRNA upstream 697268 6181726 ~ 6211002 (-) True AMCG00017476
AMCG00017482 mRNA upstream 1233978 6718436 ~ 6721393 (-) True AMCG00017482
TU112836 other downstream 244013 5222473 ~ 5223047 (-) True G90502
TU112828 other downstream 246039 5158384 ~ 5221021 (-) False G90501
TU112835 other downstream 246039 5158384 ~ 5221021 (-) True G90501
TU112697 other downstream 922300 4542775 ~ 4544760 (-) True G90400
TU112472 other downstream 2851536 2608689 ~ 2615524 (-) False AMCG00017418
TU113104 other upstream 902794 6387252 ~ 6389038 (-) True G90715
TU113210 other upstream 1404264 6888722 ~ 6914790 (-) False G90746
TU113233 other upstream 1627978 7112436 ~ 7113181 (-) True G90749
TU113453 other upstream 2346427 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 2507679 7992137 ~ 7996595 (-) True G90939

Expression Profile