RNA id: AMCG00017471


Basic Information

Item Value
RNA id AMCG00017471
length 2253
RNA type mRNA
GC content 0.45
exon number 13
gene id AMCG00017471
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5625024 ~ 5640242 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCCGCCGCGCCTGCGCAGTCTGCTGTGCAACACGTGTGCTGGGTCACGTGGTGCGGTCAACGCAGAACTCGTCGCAGCGGGAAGGCCTGAACCAGGGCCGAGTCTGCACTTCTGCCAGCTCGGCATTGATCCACTTCGGTCCTGCAGTCCACCGTGTGTGCGCCCCGCCTGCCTTCACAATGATGGGCCACACTTCCTGGCGGGGCTCCAGGGGCCCCAGCTTTGCTCAGATCCTCAAGAAGAATACTGCTCCTCCTCCCCCTGGGATAAGCATGTCCTACCTCTCCCAGAGGTATGCAGAggacagcaacaacaacatccAGGACCTGGGGACCAGACTAGACATTTCTCAAAAAGCTGCTCATAATGTACAAAATGCTGCTGCCCAGCCTAAGAATTTACCCAAAGAGCTTATTGAGAGGTACAAACGGGGTGAAACTCATTCTGTGTCAGCTTTATACCAGCTTGCACAGGTTCTGCCATTTCAGCTTGAATTAAAGGAAACGGTGACCACAGGCAATGTACAAGGATTTTACTTTGCCTTCTGTGCTGTGATTGACGGTGTGCAGTACAAGACAGGGATGGGCCTGAATAAAAAGGAGGCCAGAGCCAGTGCTGCAAGACTGGCTCTTGAGGAACTGCTGCCCACCCTCGAGTCCCAACCCCAGCTGCCTGATGCCTCGGTAGGCCCTCCGCCCTTACCTGTGAAAGGAAATGAGTCTCCTTGCCCAGATTTCCGATCTGAAAGGCATATCTATGAGCGAAAGAATCCCCTCAGTGAAAAGATTCCACACGTTGTTAAATCGGTGTTCGATAAGCTGCTGGAAAAGCATCCAGAGTTCAGCAGTTGTGGAAGTTCATTGGCAGCTTTTGTTATTCAGTCACCTACAGGATATGATGTTGTGGCCATTGGAACAGGGGATTTTAATACTAATCAGAGTGTTACCCCCAATGGACGGATCCTTCATGACTCACATGCTGCTGTTACTGCAAGGCGTTCCTTGCTGCGGTATCTGTATCGCCACCTCTTACTGTTCTACAGTAAAAACTGCACAATGGTGAAAAAATCAATTTTTCAGCTAGATGAAACCACAAAGTTGCTCAGTTTGAAAAGCAATATCAGCTTTCATCTCTACATGAATCAACTGCCAAAGGGGGCTGCCCAGCTTCCAACACACCTGCGCTTAAACCCTCTCtccatttctgcctgggaggTGAACAACCAGATTGGCCTTCATGTGACAGTAGAAGGGAAAGTCTTCTCTGTTTTCTCTTCCCCATTCAACCAAATGCCCACCAAAGTAGTGAGCATGTCAGCCAGTGACAAAATTACCCAATGGGAGGTGCTTGGTTTCCAAGGAGCTCTCCTAAGCCATTTCATTGAACCCATCTATGTCAGCAGCATTTTAATTGgGGATGCAAGCTGCAGTGATGTTCGAGGAATAGAGATTGCCGTGAAACAGCGAGTAGATGGGATCACTTCAAAGCTTCCAATGTACTACTGTGTGTACAGACCCCACATCAGTCTAGTTCCGGCACTGTATCCAGTAGAGGTGCCTTCAGCACAGAAAGCACTGAGCATGAACTGGAGCCAAGGAGACATTTCTCTGGAGATGGTAGATggattaaatggaaaaacactggaacaGTCACCATTTACAACTAGTGCAGCAATGGCAAGTAGACTGTGCAAAGCTGCAATGCTGAGTCGTTTCAATTTGGTTGCCAAGGAAGCTCAGAGAGAAAACCTTCTTGATGCTATGTTGGCAAAACCCTATCAAGAAGcaaaaaatgtgcttaaattgTACTTAATGCAGAAGGGCTGTGGTTCTTGGATTGTGAAATCGCCAGTCAGTGAGCACTTCAATATGTAAATACCCATAATTATACAAGGACGAGAGAACCTTGACAGTTTTTCGAAGCTAAATATCAGTGGTAATAAAGAGGATTTATCAGTAAGTAGTAGGCTCATTTTTGACTCATCAGATGCTTTGAAGACTTAGGCCTACATAAAATCAGTATTATTCCAGCATGTTGTATTTTTGGTTGGTTAAGCCATTTTGAAAATCGTTGTTGTAAAGattgacttttttgtttgtttattattattttgaattcattacAGAATGTTAGAAAACAgtcttaattgttttcttgATGTTTGCTGTGATTCTTAGTTAATTAACTAAGCCAAATGagtgtgtttaattaaagtgttggagatatgtttgtttatttataaatataaccaG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112908 lncRNA upstream 161960 5440212 ~ 5463064 (+) False G90561
TU112907 lncRNA upstream 161960 5461267 ~ 5463064 (+) True G90561
TU112895 lncRNA upstream 212335 5407648 ~ 5412689 (+) True G90552
TU112898 lncRNA upstream 212763 5411731 ~ 5412261 (+) True G90554
TU112894 lncRNA upstream 217495 5405442 ~ 5407529 (+) True G90551
TU113030 lncRNA downstream 36659 5676901 ~ 5677244 (+) True G90647
TU113077 lncRNA downstream 337922 5978164 ~ 5978368 (+) True G90691
TU113092 lncRNA downstream 642915 6283157 ~ 6283441 (+) True G90703
TU113098 lncRNA downstream 761492 6401734 ~ 6402188 (+) True G90709
TU113180 lncRNA downstream 1087790 6728032 ~ 6763072 (+) True G90731
AMCG00017470 mRNA upstream 870 5538512 ~ 5624154 (+) True AMCG00017470
AMCG00017461 mRNA upstream 165322 5425431 ~ 5459702 (+) True AMCG00017461
AMCG00017465 mRNA upstream 245876 5378459 ~ 5379148 (+) True AMCG00017465
AMCG00017462 mRNA upstream 249570 5373357 ~ 5375454 (+) True AMCG00017462
AMCG00017463 mRNA upstream 254382 5355762 ~ 5370642 (+) True AMCG00017463
AMCG00017474 mRNA downstream 139638 5779880 ~ 5792505 (+) True AMCG00017474
AMCG00017475 mRNA downstream 168586 5808828 ~ 5816998 (+) True AMCG00017475
AMCG00017480 mRNA downstream 310594 5950836 ~ 5951792 (+) True AMCG00017480
AMCG00017477 mRNA downstream 672540 6312782 ~ 6317887 (+) True AMCG00017477
AMCG00017479 mRNA downstream 721117 6361359 ~ 6370652 (+) True AMCG00017479
TU112690 other upstream 957194 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 2929571 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 2929571 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 5413088 207586 ~ 211936 (+) True AMCG00017388
TU111993 other upstream 5526641 93120 ~ 98383 (+) True AMCG00017386
TU113125 other downstream 1089496 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 1089496 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 1089496 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 1089496 6729738 ~ 7184790 (+) False AMCG00017486
TU113139 other downstream 1164502 6804744 ~ 7184790 (+) False AMCG00017486

Expression Profile