RNA id: AMCG00017473


Basic Information

Item Value
RNA id AMCG00017473
length 874
RNA type mRNA
GC content 0.35
exon number 6
gene id AMCG00017473
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5764570 ~ 5767143 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAATCGCGTGTTTACTGACGATTTAGCTGTAGGTTAATTGCAGTCCTCTGAGATATCGTATTTAGGTggttactactactattaaacatttagaaatggcTGCTAGCTACAGGAAGCCTGGCCTTGGCTCTAATCAGCGGAAGAAAGGTGGTCCTAAACCAGATTTGACAGAAGAACAAAAGCAAGAGATCCGGGAAGCATTTGACCTGTTTGATACTGATGGTTCAGGAACCATTGATGTTAAAGAACTGAAGGTTGCTATGCGTGCATTGGGTTTTGAACCAAAGAAAGAGGAAATCAAGAAGATGATAGCTGACATTGATAAGGAAGGCTCTGGGACTATTGACTTTAATGATTTCTTGTGCATGATGACACAGAAAAtgAGCGAGAAGGACTCGAAGGAAGAAATCATGAAGGCCTTTCGATTATTTGATGATGATGGAACTGGAAAGATCTCTTTTAAGAACCTTAAGAGAGTTGCTAAAGAACTTGGAGAAAATTTAACTGACGAAGAACTGCAgGAAATGATTGACGAAGCTGACCgtgatggagatggagagattAATGAGCAAGAATTCTTAAGGATCATGAAAAAAACCAGCctgtattaaaactgaataacaaTACTGTTGTTTTTAGCAGAATATTTTGCACTTTGAATTTGTTAATGACAATTAAACTTAACCAGTTGTCAggttatgtatttttgtgtaattcatttttaaaaatatattgtatatggtACAAGGTCTACTTGAAAATGctggagtaaaataaaaatgtcttcataaattgagaatttttgtaatttatttattgacgaAGCAGAAGAAATTATTTCCCACAAATACAACATTAGATAGTATGGTTTAAT

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005509 calcium ion binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K16465 CETN1; centrin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113031 lncRNA downstream 87321 5676899 ~ 5677249 (-) True G90648
TU112880 lncRNA downstream 408254 5355262 ~ 5356316 (-) True G90540
TU112856 lncRNA downstream 508164 5256089 ~ 5256406 (-) True G90520
TU112750 lncRNA downstream 827404 4929386 ~ 4937166 (-) True G90443
TU112709 lncRNA downstream 1099403 4662836 ~ 4665167 (-) True G90411
TU113053 lncRNA upstream 12737 5779880 ~ 5780526 (-) True G90670
TU113105 lncRNA upstream 623742 6390885 ~ 6391229 (-) True G90716
TU113106 lncRNA upstream 628505 6395648 ~ 6395865 (-) True G90717
TU113107 lncRNA upstream 629485 6396628 ~ 6396891 (-) True G90718
TU113113 lncRNA upstream 926590 6693733 ~ 6694106 (-) True G90724
AMCG00017469 mRNA downstream 244415 5491436 ~ 5520155 (-) True AMCG00017469
AMCG00017468 mRNA downstream 280112 5467060 ~ 5484458 (-) True AMCG00017468
AMCG00017467 mRNA downstream 299009 5461065 ~ 5465561 (-) True AMCG00017467
AMCG00017466 mRNA downstream 338896 5404844 ~ 5425674 (-) True AMCG00017466
AMCG00017459 mRNA downstream 554753 5208933 ~ 5209817 (-) True AMCG00017459
AMCG00017472 mRNA upstream 23705 5790848 ~ 5808491 (-) True AMCG00017472
AMCG00017476 mRNA upstream 414583 6181726 ~ 6211002 (-) True AMCG00017476
AMCG00017482 mRNA upstream 951293 6718436 ~ 6721393 (-) True AMCG00017482
AMCG00017481 mRNA upstream 1005679 6772822 ~ 6773798 (-) True AMCG00017481
AMCG00017485 mRNA upstream 1209794 6976937 ~ 6981260 (-) True AMCG00017485
TU112836 other downstream 541523 5222473 ~ 5223047 (-) True G90502
TU112828 other downstream 543549 5158384 ~ 5221021 (-) False G90501
TU112835 other downstream 543549 5158384 ~ 5221021 (-) True G90501
TU112697 other downstream 1219810 4542775 ~ 4544760 (-) True G90400
TU112472 other downstream 3149046 2608689 ~ 2615524 (-) False AMCG00017418
TU113104 other upstream 620109 6387252 ~ 6389038 (-) True G90715
TU113210 other upstream 1121579 6888722 ~ 6914790 (-) False G90746
TU113233 other upstream 1345293 7112436 ~ 7113181 (-) True G90749
TU113453 other upstream 2063742 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 2224994 7992137 ~ 7996595 (-) True G90939

Expression Profile