RNA id: AMCG00017475


Basic Information

Item Value
RNA id AMCG00017475
length 1695
RNA type mRNA
GC content 0.50
exon number 9
gene id AMCG00017475
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5808828 ~ 5816998 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTcatctaaaaagaaaaacaaagggaaatctAGTCGATCTAGTGAGGGGGAAAACGGCAGTGTGTTAGGGGATAGTGGTGCCCTGGAGTCACCACAAAACCAAACGTTAGGTATCGAAGAAGATAGGATTCTCTCATTCACTGTTATCGACTTCATTGATAaagCTGAAGAAAGAGTTCCCAAATCTTGCAGGAGATCCCTGGTACAGCTAAGCCTAAACTCCATGAAGTCTGCAAATATCTCTATTGGACGACCAGTTTTGCTTTCCAGCAGTGTGTGCAAGCAAGAGgTGTGCATTGCTTGGCCGGCAGCCAGTTTTCCTGGTGGGAGAGTTGGTCTACATGGGTGTTCACAGCGAAATCTGAAAGTAAAAGCCGGGGATGCGGTGACTGTTCAGCCACTAACGGGCCCTTTACTGCAGGCAGAAGAAGTGCACTTGTCAACCAGGCAAAAAGAAGACATTGTTAACATGGAAGAATTCACAGATTTTCTTCTTCGATCTATGGATGGAAAAGTCATACTTCCGGGAAACTTTCTCACTCTGACCTTTTACGGACGCTCATGCAGCCTGAAAGTGGAGAGAGTGAAAGGAGTGGATGGCATCAGCATGGAAACGTGTGAACTTCTGCCCTCCGAAATAGAAACAGAGGCGTTTGACAAATCCACTTTGGAGACGACAACAGCTGACTTGTCCTTTCAGCTCAGTCAGATGAATATGGAGGACAATGCCAGCACCCCCTGCAAGCCCTGCTCCACTTTGCCACCGATGGCTCCATCTCCATCTGCAGTGCAGACGAGCCCCTCTCCACCTAGACCAGCAGAGGAGCTGTGCAGTGTAGAAGACCAAAGTCTCCATCACACCAGCAGTGAACAAATCCCTCAGTTTCAGGAGTTGCTAATTTCACCCACTTTTGACTCTGGAGTTAAATCCAACAgtgacacattttattacatttctctgCTTACAAAAATCAAGTTTATAGAAAAGAATGCAGGCAAGAGAGAGGCTCTGGAGAGCTCACCCAAGGTTACATACAGCATGATTGGGGGCCTGAGTAACCAGCTCAGTGCTATACGGGAAACCATTGAGCTGCCTCTGAAACATCCAGAACTCTTCAAGAGCTACGgaaTCCCGGCTCCCAGGGGGGTGCTGCTGTATGGGCCCCCAGGGACAGGCAAGACTATGATTGGCCGAGCGATAGCCAGTGAAGTGGGTGCTCACATCACTATCATCAACGGCCCTGAAATTATGAGCAAGTTTTATGGAGAAACGGAAGCACGCCTGAGACAGATATTTTCTGAAGCTTCTGAAAGGCATCCCGCGATTATTTTTATAGATGAACTAGATGCCCTGTGTCCAAAGAGAGAGGGCGCTCAGAACGAGGTGGAGAAACGAGTCGTGGCCTCACTGCTGACCCTGATGGATGGCATCGGCTCAGAGGAGCACGCTGGGCAGCTTCTTGTGTTGGGCGCCACGAATAGGCCTCACGCCCTGGACCCAGCCCTGCGCAGACCTGGTCGCTTCGACAAGGAGATCGAAATCGGAGTTCCCAACGCCGGGGAACGCGCCGACATCCTGAGGAAGCAGCTGAGCAAGGTACCGTGCCAGCTAACCGAGGAGGCTCTGGTGCAGCTCGCTGACAGCGCTCATGGGTACGTGGGGGCAGACCTGGCAGCGGTCTGTAAAGAAGCA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14575 AFG2, DRG1, SPATA5; AAA family ATPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113030 lncRNA upstream 131584 5676901 ~ 5677244 (+) True G90647
TU112908 lncRNA upstream 345764 5440212 ~ 5463064 (+) False G90561
TU112907 lncRNA upstream 345764 5461267 ~ 5463064 (+) True G90561
TU112895 lncRNA upstream 396139 5407648 ~ 5412689 (+) True G90552
TU113077 lncRNA downstream 161166 5978164 ~ 5978368 (+) True G90691
TU113092 lncRNA downstream 466159 6283157 ~ 6283441 (+) True G90703
TU113098 lncRNA downstream 584736 6401734 ~ 6402188 (+) True G90709
TU113180 lncRNA downstream 911034 6728032 ~ 6763072 (+) True G90731
TU113186 lncRNA downstream 1057969 6874967 ~ 6892610 (+) True G90737
AMCG00017474 mRNA upstream 16323 5779880 ~ 5792505 (+) True AMCG00017474
AMCG00017471 mRNA upstream 168586 5625024 ~ 5640242 (+) True AMCG00017471
AMCG00017470 mRNA upstream 184674 5538512 ~ 5624154 (+) True AMCG00017470
AMCG00017461 mRNA upstream 349126 5425431 ~ 5459702 (+) True AMCG00017461
AMCG00017465 mRNA upstream 429680 5378459 ~ 5379148 (+) True AMCG00017465
AMCG00017480 mRNA downstream 133838 5950836 ~ 5951792 (+) True AMCG00017480
AMCG00017477 mRNA downstream 495784 6312782 ~ 6317887 (+) True AMCG00017477
AMCG00017479 mRNA downstream 544361 6361359 ~ 6370652 (+) True AMCG00017479
AMCG00017478 mRNA downstream 565361 6382359 ~ 6400405 (+) True AMCG00017478
AMCG00017484 mRNA downstream 1027561 6844559 ~ 6844962 (+) True AMCG00017484
TU112690 other upstream 1140998 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 3113375 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 3113375 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 5596892 207586 ~ 211936 (+) True AMCG00017388
TU111993 other upstream 5710445 93120 ~ 98383 (+) True AMCG00017386
TU113125 other downstream 912740 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 912740 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 912740 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 912740 6729738 ~ 7184790 (+) False AMCG00017486
TU113139 other downstream 987746 6804744 ~ 7184790 (+) False AMCG00017486

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00014897 True 2133 mRNA 0.54 18 NC_007125.7 540157 ~ 552036 (-)