RNA id: AMCG00017476


Basic Information

Item Value
RNA id AMCG00017476
length 4218
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00017476
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 6181726 ~ 6211002 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCACAAACCAGTTTGCTGCAGGGGAAGAGGTTTTACTGCAGGGAGTGGGTCTTCCACAAGCTCCAGCACTGCCTCCAGGAGAAAACGAACAGCATCCTCAGTGTTAACAGCACTCCCAACAAACAGGCCAGTGTAGCAAATCCGGTGAGCAATGCCAGCAAAGGAGCTGCCTGGGGAGTGTTGCTGGTGGGGGGTCCGGGCAGTGGGAAGACAGCCCTGTGCACCGAGCTGCTGTGGCCCAGCTCGCCTCAGGGAGTGCACAGGGGGCTGCACAGGCAAGGGCTGGCCTTCCACTTCTGCCGGGCCGACGACTCGGACACCCTCTGTGTGAGCGGCTTCGTCAGGGCCCTGGTGGCTCAGATCTGCCACAGCGGACTGGTCCAGGGATATGAGGACAAAGTTAGAGATCCTGCCGTTCAGAGTGCTTTGCAACCTGGCGAGTGTGAAAGGAACCCTGCTGAGGCTTTCAAAAGGTGCATTCTTCTCCCCCTTCTGGGAGTGAAGCCTCCACAGCAGTCTGTGTTCATCCTGGTGGATTCCATCGACGAGGGGTGCCACTTTGGAGAAGGGGAGCAGAGATCTTCAAGCTCGTCTCGGACTATTGCTGAGCTCTTAGCAAGCCACCATGAGTTCTTCCCTCCTTGGCTGCTCCTAATATGCTCGGCCCGGAAGCAAAATAAAGCTGTAACTAAATTGTTTACAGgATTTCGTAAGATCAGCCTTGATGACCTCCGCAAGGCTTACATAGTCAAAGATGTGCAACAGTATATTCTCCACCGGCTGGACCAAGAAGAAGCACTGAGGCAACACTTGACGAAAGAAACGGCAGAAATGTTGAATCAGCTCCATATAAAAAGCAGCGGATGTTTCCTGTACCTGGAACGAGTGCTAGATGGAGTTGTGGAAAACTTCATCATGCTTCGAGAGATCCGGGATATCCCTGGGACGTTGAACGGGCTCTACCTGTGGCTGTGCCAGAGGCTTTTTGTGAGAAAACAGTTTACAAAAGTGCAGCCAATCCTTAATGTGATCCTTGCAGCATGCAGACCGCTAACAGTTAAGGAGCTGTATCATGCAGTGTGGACAAAAAATATGTCATTGACAATGGAggaatttcaaaagaaaatggatATCCTATCAAAGCTTCTTGTCAATGGCCTGGGGAGCACTAAAATCCTTTTCCATTATAGTTTTGCAGAGTGGTTGTTGGATGTAAAGCATTGCACTCAGAAATATTTGTGTAATGCAGCAGAAGGACATAGGATGATGGCTATGAGTTACACATGCAAAGCCAAGGAGCTTAAACCACTGGAAGTGCAGGAATTTGCATTACACCTGATTAACTCCAACCTCCAAATAGAGACCTATAACCTTGCACTCTGGATGGTATGGAATGGCACACCAGCTAAAGACTCTTTGACAACCTCCATCCCTAAAGAGCAGGAAGTTTTACAGTTGTTGGTCAAAGCTGGTGCCCATGTCAACAGTGAAGATGACCGAGCTTCTTGTATTGTGCAACAAGCCTTGGAAAGAGAGGATTCAATTCGGACTTTACTTGATAATGGAGCGTCTGTGAACCAACGTGACTCCAGTGGAAGGACTTTGTTGGCAAATGCTGCCTACAGTGGCAATTTAGACGTGGTTAACTTGCTGATTTCTAGAGGCGCAAATTTGGAAATTGAAGACAGCCATGGACAGACAGCACTTACACTTGCGGCAAGACAAGGACATACCAAGGTGGTGAACTGTCTCATTGGCTGTGGGGCGAACATCAATCACACTGACCATGATGGCTGGACAGCACTGAGGTCTGCCGCATGGGGAGGACATTCGGAGGTGGTCTCTGCTCTTCTGTATGCCGGCGCCAAAGTGGATTGTGCAGATGCTGACAGCAGAACTGCCTTGAGAGCTGCGGCTTGGGGCGGGCACGAGGACATTGTGCTAAACCTGCTTCAGCACGGAGCAGAagtcaataaagcagataatGAAGGAAGGACTGCACTCATTGCTGCAGCCTACATGGGTCACAGGGAGATTGTGGAGCATCTGCTTGATCACGGGGCAGAGGTCAATCACGAGGATGTGGATGGAAGGACTGCTCTTTCAGTAGCAGCGCTCTGTGTGCCAGCAAGCAAGGGACATGCCTCCGTGGTCAGTCTACTCATAGAGCGCGGGGCAGAAGTGGATCACTGTGACAAAGATGGCATGACCCCATTGTTGGTTGCAGCCTATGAAGGACATGTGGATGTAGTTGATTTGCTGCTAGAAGGAGGAGCAGATGTCGATCACACAGACAACAACGGGAGGACACCTCTTCTGGCAGCAGCATCCATGGGCCATGCCTCAGTCGTCAACACCCTTCTGTTTTGGGGAGCAGCTGTAGATAGTATTGACAGTGAAGGAAGAACTGTGTTGAGTATAGCGTCTGCTCAAGGCAATGTGGAAGTCGTACGGACTCTGCTGGACAGAGGATTAGATGAAAATCACAGAGATGACGCTGGATGGACCCCACTGCATATGGCATCATTTGAAGGGCATAGGCTAGTGTGCGATGCACTTATTGAGCAAGGTGCCCGATGCAGTGAAGTCGATAATGATGGACGAATCCCTCTGATATTGTCTGCTCAAGAAGGACATTATGACTGTGTACAGATACtacttgaaaataaatctagCGTTGATCAGAGAGGTTACGATGGAAGGAATTCACTTCGAGTCACAGCTCTGGAAGGTCACCGAGACATTGTTGAGCTGCTTCTTAGCCACGGAGCCGACATAGACTGTAAAGATGCCGATGGACGTCCAACTCTTTATATTTTGGCACTTGAGAATCAGCTAGCCATGGCCGAATACTTCCTAGAAAACGCAGCAAATGTAGAAGCCAGTGATTCTGAGGGAAGAACTGCCCTTCATGTTTCCTGCTGGCAGGGACATGCAGAAATGGTGCGCTTACTTATCAACTATCATGCGGATGTCAATTCATGTGATAATGAGAAACGCTCTGCTTTGCAGTCTGCTGCATGGCAGGGTCACATCAAGATGGTTAAATTACTGATAGATAACGGAACCCACGTCGATCACACGTGTAATCAAGGAGCAACGGCACTGTGCATCGCAGCACAGGAAGGACACATCGATGTGGTTCAGCTGTTACTAGAACACGGGGCGGACCCAAACCACGCCGATCAGTTCGGACGCACAGCCATGCGGGTAGCTGCAAAGGGGGGGCATTCTCAGATTATAAAAATTCTAGAAAAGTATGGCGCGTCTAGCTTAAATGGTTGTAGTCCTTCCCCTGTGCACACAATGGAACAGAAGGCCCCCCTTTCTGTTACAGGGAAGATGCAGTGTTTAACTACAAAATCCAACAGCTCTGGCAGCACGGGTGTTGCGGATATACAGCCTTCAGGTCGAGGTTTATCCAATGGTCCTGTACATGCCTTTAGCTCTCCATCAGAATCTCCGGATTCAACTGTTGACCGACAGAAGTCCTCTCTCTCCAATAACTCTCTTAAAAGCTCAAAGAACTCTTCTTTGCGAACCACTTCATCGACTGCAACCGCCCAAACTGTGCCCATAGACAGTTTCCATGGGCTTTCCTTTACAGAGCAAATTCAGCAGCACTCTTTGCCTCGCAGCAGAAGCAGACAGTCCATAGTTTCACCTTCTTCTACTACCAAGTCCATAGAACAACATCCTAGTTCACCATCCAGTGAATTTGAATGGAGTCAAGTAAAGCCCAGTCTCAAGTCAACTAAAGGAAGTAAAGTGGGAAATAATGCATCCAATGGCTCCAGCAAGTGTGGGCCAGGGGAGAAGAAAAAGTCAAAGAACAGCGGCTCATCGCAGAGCCAGGTGTTGGAATACGAAATGACCCAATTTGACAAAAGGATCGCTCTAACCAAGCCTGTGTCAAATGTTGGAGTGACAGTGAAACAGCTTCCCCCAGAACCTCAGTGTAAAATTGTGGTTCCCCCCACACAGCAAGAGGTGGGGCGGTCACAACAGCAATTCCTAATCCAACAGCAGAATAGCGCAGAGAAGAAAAGGAATGGCATCATGACCAATCCAAATTATCACCTTCAGGGGAATCAGGTTTTCCTTGGGAGGGTTTCTGTCCCAAGAACTGTGCAAGATAGAGGACATCAGGAAGTACTGGATGGTTATCCCATAGAGTGGAAGCTTTTAACACCTCAAAAGCCTGGGGAAGAATGA

Function

GO: NA

KEGG:

id description
K21440 ANKRD50; ankyrin repeat domain-containing protein 50

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113053 lncRNA downstream 401200 5779880 ~ 5780526 (-) True G90670
TU113031 lncRNA downstream 504477 5676899 ~ 5677249 (-) True G90648
TU112880 lncRNA downstream 825410 5355262 ~ 5356316 (-) True G90540
TU112856 lncRNA downstream 925320 5256089 ~ 5256406 (-) True G90520
TU112750 lncRNA downstream 1244560 4929386 ~ 4937166 (-) True G90443
TU113105 lncRNA upstream 179883 6390885 ~ 6391229 (-) True G90716
TU113106 lncRNA upstream 184646 6395648 ~ 6395865 (-) True G90717
TU113107 lncRNA upstream 185626 6396628 ~ 6396891 (-) True G90718
TU113113 lncRNA upstream 482731 6693733 ~ 6694106 (-) True G90724
TU113218 lncRNA upstream 522233 6733235 ~ 7184824 (-) False G90746
AMCG00017472 mRNA downstream 373235 5790848 ~ 5808491 (-) True AMCG00017472
AMCG00017473 mRNA downstream 414583 5764570 ~ 5767143 (-) True AMCG00017473
AMCG00017469 mRNA downstream 661571 5491436 ~ 5520155 (-) True AMCG00017469
AMCG00017468 mRNA downstream 697268 5467060 ~ 5484458 (-) True AMCG00017468
AMCG00017467 mRNA downstream 716165 5461065 ~ 5465561 (-) True AMCG00017467
AMCG00017482 mRNA upstream 507434 6718436 ~ 6721393 (-) True AMCG00017482
AMCG00017481 mRNA upstream 561820 6772822 ~ 6773798 (-) True AMCG00017481
AMCG00017485 mRNA upstream 765935 6976937 ~ 6981260 (-) True AMCG00017485
AMCG00017487 mRNA upstream 999356 7210358 ~ 7221745 (-) True AMCG00017487
AMCG00017489 mRNA upstream 1081854 7292856 ~ 7299945 (-) True AMCG00017489
TU112836 other downstream 958679 5222473 ~ 5223047 (-) True G90502
TU112828 other downstream 960705 5158384 ~ 5221021 (-) False G90501
TU112835 other downstream 960705 5158384 ~ 5221021 (-) True G90501
TU112697 other downstream 1636966 4542775 ~ 4544760 (-) True G90400
TU112472 other downstream 3566202 2608689 ~ 2615524 (-) False AMCG00017418
TU113104 other upstream 176250 6387252 ~ 6389038 (-) True G90715
TU113210 other upstream 677720 6888722 ~ 6914790 (-) False G90746
TU113233 other upstream 901434 7112436 ~ 7113181 (-) True G90749
TU113453 other upstream 1619883 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 1781135 7992137 ~ 7996595 (-) True G90939

Expression Profile