RNA id: AMCG00017478


Basic Information

Item Value
RNA id AMCG00017478
length 7395
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00017478
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 6382359 ~ 6400405 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCCAGCTCTCACCGGTACCGGCATCGTAACCATTCAAGTAGACGACATCAATGACAACATCCCAGTCTTCGCGTCACTCGCATTCCACACCACTGTCCCTGAAGATGCACCGACAGGAACCGATGTCCTGCTCGTCAACTCCTCCGACGCCGACGCAGGCATGAACGCAGTGGTCAGCTACAGCCTGACTGGAGGAAATGGTCAATTTTCCATTAACCCAGCTACTGGACAGATCATCACGAGCACCCTGCTGGACAGGGAGATCAAGAGCAATTATCAGCTGGTAGTTGTGGCCTCTGATGGTGGGCATCCCCTCGCCATGTCAAGCTCTGCCACGGTTTCTGTTGTGATAGCAGACGTTAACGACAACCCTCCACGATTCCATCACCATCCCTATGTCACTCACGTCCCAGCGTCTACTTCTGCAGGTTCCCTTGTGTTTGCGGTCACAGTGACAGATGAGGATTCAGGATCGAACGCCCAGCTTCACTATTCGCTGGTGGGCAGGAACTCCGAGAAGTTTAAGATTGATCCCGTGCGAGGTGCCATCACGGCAAATGAGATGCTCGCCGGGGGCTCTGAAGTTACCTTCACTGTCCGGGTGAAAGACGGTGGGGCAAACCCCAAAACAGACACAACAACTGTGACCGTGAGATTTGTGACAGGGGAAGATTTTCCAGTCATCAAGCCAGGACAGACTGTTTTCAAATTTCCTGAAAACCAGGGAGTTCATACTTTAGTTACTACAATCTCTGGATCGTCTACCAGAAGGGGACCCTTGTCGTACTACATTGCCAGCGGAAATCTTGACGATGCATTTCATGTTGACCAGCAGACAGGAGAGCTCTCCATCAAACAGGCTCTGGATTTTGAAAACATACCAAAGTATGTGCTTTGGATTGAAGCCAGAGATCAAGGCTTTCCTCCCTTTTCATCCTACGAAAAAGTAGAAATAAACATAATGGATGTCAATGACAACTATCCAACTTTTGAAAAGGAATCCTTCAAGGCTGATATCTTAGAAAACTTGTCTCCACAGAGAGTGCTTATTGTTTCAGCAGTTGATGAAGACAGTGTCCAGAATGGGCAATTGGAATATGCAATTATCGATGGAAACAAAGAGAATAGCTTCAGTATCAACAGAGCGACTGGAGAAATCCGAAGCACAAGGCCACTGGATAGGGAGAAGGAGGCTCACGACACAAGTCTTCCCTTCTCTATCAATCCCAACACCGGTGACATAACCATTAGTAGGCCACTGAATAGAGAAGACATGGAAAGATATATTGTCAAAGTCTCTGCTCGCGATTACAGCTGGACAGTCAGCACCGATGTCACTATATTTGTGTCAGACATCAATGATAACGCTCCTCGTTTCAGTCGCCCATCCTACTACCTAGAATACCCCGAGCTCACAGACATCGGATCACTCGTAACTCAAGTCTCAGCAACAGACCCGGACGAAGGCATCAATGGAAAGATCTTTTATTTCATCCGGTCGCAGTCTGAATTCTTTAGGATCAATTCTAGCACTGGAGAGATTTTCATCAAGCAGCGGTTAAAATATCAGAATTCATCAGGAGTGAGCAACGTGAACATCAACCGACACAGTTTCATTGTAACTGCTTCAGACAGGGGGGCTAGACCTCTGATGAGCGAAACAACCGTCATCGTAAATATAGTGGACAGCAATGATAATCCACCTCAGTTTGAAGCAACCGATTATTTCACACCTGTCACAAAGAGTGTTAAGGTCGGTACAAAACTCATTAGAGTTGTCGCCACTGATAAGAAAGACTTTGGCCTTAATTCGGAAGTTGAGTACTTAATATCAGGTGGCAATAGTTCCAATAAGTTCCGTCTGGAAAGACAAAATGGATGGGTGACTGTAGCCTCTTTGCTCACGGCCGATGTGAATAAGATTTTCATGATTGAAGTCACTGCAAAAGACAAAGGAAACCCTCCACTCTCGTCGCACGCTAGACTCCGTGTTGCAGTGACAGAGGAGAATCACCACACGCCAGAGTTCTCCCAAACCCACATCAGTATGTCCATCCCAGAGAGCCTTACTGTGGGCACAGTTATCAGGACAGTTTCAGCTCGAGATAAGGACAAAGAAATGAATGGGCTCATTACATACAATATATCTTCAGGCAACGAAGTAGGCCTTTTCACGATAAATAGTAAGTCAGGTGCCTTAAGCTTAGCAAAGCCTCTGGACTACGAAGAACAACAAAATCTCGAACTCAAAGTAACCGCCACAGACGGGGGCTGGATTGCAAAGACTGGCTATGTTACTATAACGATTCATGTGACTGACGTAAACGATAATGCCCCTGTCTTTGATGCTGATGAATATTTCCCAGTTGTGCAAGAAAACGTCCCCAGTGGCACCACTGTTGTCCGCATGAACGCAACCGACAAAGATTCTGGACCAAATTCCGTAATGGCGTATGTCATTCAGTCTTCCGATAGTGACTTGTTCGTGATTGATCCAAATACAGGCATTATTACTACCCAGGGTTTCCTGGACTATGAATCAAAACAGGTTTATCATTTAACAGTGAAGGCTTTCAACGTTCCAGACGAGGAGCGCTGCAGCTTTGCTAATGTCAATATCCAGTTAAAGGGCGCAAATGAATATGTTCCCCGGTTCGTCTCCAAGCAGTACTATTTTGAGGTGTCTGAGGCTGCTCCGAGAGGGACGATAGTAGGAGAAGTATTTGCAAGTGACCGAGATCTTGGAGTGGATGGAGAAGTCCTTTACCTTATATTTGGCAGAAGCAGAAAGAAGGGCTTCAGCATCAATAAAAAGTCTGGACAGATTTATGTGTCTGGGCCTCTTGACCgcgaaaaagaagaaaaaatctatttgaaagTTCTTGCAAAAAATGCCGGAAGCATAAAGGGGGCAGATATCGATGAAGTTTTTGTTAATATCACTATTCTGGATGCTAATGATCCTCCTGTCTTCACTTCGGAATCATACAACGTGCAGATCAGTGAGGGCATCCCCCCTGGAAGTCTTGTTACCTTTGTGAGTGCAGAGGATTCAGACTCCGTACCCAGCTGGAGCAGGTTCTCCTATTTCATGGGCTCTGATAATGAGAAAAATGCTTTTGCAATTAATCCCCAGACAGGTCAGGTTTCAGTAGCTGCAGAGCTTGATAGAGAGTCCACACCTGTTTACAATCTGACTGTCCTGGCAGTTGATTCCGGTTCTCCTTCTGCTACTGGGAGTGCGAGCCTGATCGTTACATTAGAGGATATCAATGACAATGGCCCCACACTGATCATGACAAGAGGAGAGGTGACAGAGAATCAGCGTGCAGGAACCATTGTAATGAAACTTAGCTCTACAGATCCCGATCTACCTCCAAACCAGGGACCGTTTACATATAGTTTACAAAGCACTGGATCTGCCACAAGCTATTTCAGCCTTAGTCCTGCAGGAGTGCTGAGCACGAGCAGAGAGATTGACAGAGAGCAGATCAGTGATTTCTACCTGTCAGTGGTGACAAAGGACTCGGGCGTCCCACAGATGTCCTCCACGGAAACAGTCCACGTCAAGGTCAATGACCAGAATGACAACCCGTCAGAAGCTAGAACAGTGGAGATCTTTGTCCACTATTTTGGTAACCAGTTTCCTGGTGGAAGTTTGGGTAGCGTGAAACCACAAGACCCAGATGTGCAGGACAGTTTCCGCTGTTCTCTCACGTCAGCAGTCCCAAATCTTTTCAGCATCACTGCAGGTACATGCGATTTGAATTCCAATCCGAGGTCTACAGATGGGACTTTTGAGTTTACAGTTCGCAGCAGTGATGGGGTGCACGGAGCTGTCAACAGCAACATCCGTGTTTTCTTTGTGGGATTTAACAACATCACTGTTGATAACAGCATTTTAATCCGTctaaatgtgcaaaatgttaGAGACTTTTTCACCAATAACTATCTTAGTTTCCTACGCATAGCGAACTCTCAGCTCGCTGGCCTGGGAACTGCTGTGCAGCTCTATGGGGCTTTTGAACAAAATAACAAGACCTTCCTAATGGCTGCTGTAAAGCGAGGCCAAAATCTGTATGTCAACCCCAGTGGAGTAGCCACgttttttgaaagtataaaAGACATCCTTCACAGGCAGAGTGGAGTGCGCATCGACTCGGTGGACCATgacccctgcacacacagcccATGTCAGAATAGAGGAAGCTGCAAGAAGCACCTCAGTGTGAGTCCCAAAATGAAGGCTGAGGAGAGCATCCCTGTCATCCTCGTTTCAAACGAACCTCTCCAGCCCTACGTCTGTAACTGCATGCCAGGATATGCCGGAAGCCTGTGTGAGACTGACATTGATGAGTGCCTTCCGTCTCCCTGCCACAACGGTGGAACCTGCCACAACCTGGTTGGGGGGTTTTCCTGCAGCTGTCCAGAGGGATTCACAGGAATGGCTTGTGAGAGGGATGTCAATGAGTGCCTATCAAACCCTTGCAAGAATGGGGCACTTTGCCAGAATTTCCCAGGAGGTTTCAACTGTCTCTGCAAATCTGGATTTAcaggTGTCTTTGGAAAGCACTGTGAGCTGAATAGCTATGGCTTTGAGGAGTTGTCCTACATGGAGTTTCCCAGTCTGGATCCCAATAATAACTACATCTACATCAAGTTTGCTACTATTCAGAGCAATGCTCTTTTGATGTACAACCATGACAATCAGACTGGAGACAAGTCGGAGTTCCTGGCTCTGGAGATTTTTGAGGGAAGAATGAGATTCTCCTTTAACTTAGGAAGCGGGACCTATAAACTAATGGCGATGAAAAAGGTCTCCGATGGACAGTTTCACACAGTCATTGCAAGGAGAGCAGGAATGGCCGCGTCCCTGACCGTAGACGTGTGCTCTGAGGATCAGGACCCTGGGTATTGCACTGTGAGCAATGTGGCCGTTCATGCTGACTGGACGCTGGATGTGCagcccaacagactcacagtaGGAGGTGTCAGGTCAATAGAGCCAGTTCTTCGGCGCAAAGGACAAGTTGCAACCCACGACTTTGTCGGCTGCATAATGGAGTTTGCTGTTAATGGACGACCTCTGGAGCCGAATGTCCAAGACTGGAAGGCGCTTGTTCAGCAAATGTTTGTAAGCATGGAGGCACCTGTGTGGACTACTGGTCATGGCAACAGTGTAAATGCACAGAAGGGTTTACTGGAAAATACTGCGAAAAATTCATCACGGTTGACACAGCCCTGTCTCTGGATGGCAGTGGCCatcaaGAATGGCAATGTGCATTACACTTCTGATGCTGGTGTGGGAGGAAAGGTGGAAAGAACTGtctcagaattaatggtctcagATGGCCATTGGCATACGCTCCAGCTGCAGAAGAATGGCTCTATTACTTCTCTCCGTGTCGACGGTTCCTACTTAAAGGAAATACTTCACCAGACTCAGGATTTAGGAGGAGTCAATGTGTTAACGCTCTCACTGGGGGGAATTCCACCGGGACCAACTCAACAGAAAACACCCATGGgTTTCGATGGCTGCTTTGCTTATGTTAAATACAAGGGGGAAAACCTGCCTTTCAGTGGGGAGCACAGCTCTGTTACAATATCAAAAACACATCCTTCTGTCAAGATCGGCTGCAGGGGACCCAATGTGTGTGCCAGTAGTCCTTGTTGGGATGATCTCATGTGTGTCAATCAGTGGTACGCCTACGAGTGTGTTCCCCCAGGGCACTGCTCCTCCAACCCCTGTCACAACGGAGGCAGCTGTGAACCCAGTCCCCATGCTGGCTTTACCTGCACCTGCCCTGAGTTTTACACCGGAAGGACCTGTGAGACTGTTGTGGCTTGCCTTGGAGTGCAGTGTCCACAAGGAACTCTATGCATGATGGGTAACAATGGAGGCTTTACCTGCAGTACCACTAAAGGACCAGATGAACTGTCCTTACCCATATGGGCAGTACCTGCCATTGTTGGAAGTTGCGCCACAGCCTTAGCACTGGTGGTTTTGAGTTTGATCTTGTGTAACCATTGTAGGGGGCGAAAGACCACGGTGCCAAAAGAGGAgaagaaaccaaaagaaaaaaagaaaaaagggagtGAGAATGTGGCCTTTGACGACCCAGATAATATCCCTCCTTATGGCGATGACATGACCGTGAGAAAGCAGCCCGAAGGCAACCCCAAACCTGATATAATCGAAAGGGAAAATCCTTACCTTATATATGATGAAACAGACATTCCTCACAATACAGAGACTGTACCCAGTGCCCCCTGTGCTCCCTGTGTTGGCACTGAAGCCGACATTGAGCATTACGACATTGATAATGCCAGTAGCATTGCCCCTTCTGATGCCGATATCATTCAGCACTATAAACAATTCAGGAGCCACACACCCAAATTCTCAATTCAAAGACATAGTCCACTAGGGTTTGCACGGCAGTCCCCTTTACCACTGGGAGCAAGTAGTTACACTTACCAGCCTTCATACAGCCAGGGTCTTAGATCAACCCCACTGAGCCACTCCACCTGCCCAACCCCTAATCCTCTCTCTCGGCACAGTCCAGCTCCTTTTTCCAAGCCATCGTCCTTCTACCGCAACAGCCCAGCGCGGGAACTGAATCTCGCGAGGAGAGAGGGGAGTCCCTTGGACTTACATGGTGAGGTGTGCCAGCCTGGAATGTTCAACTACGCCACCCGCCTGGGAAGGAGAAGCAAGAGCCCCCAGACGATGGCGGGTCACGGTTCCAGGCCAGGGAGTCGCCTTAAACAGCCAATAGAGCAGATTCCTCTTGAGACAGGACCTCCGGTCGGACTCTCTATAGAGGAAGTAGAGAGGCTGAATACCCCTCGGCCGAGAAACCCCAGTATCTGCAGCGCCGATCACGGGAGATCTTCCTCAGAAGATGACTGCAGGAGACCTCTCTCCAGGATCAGGAATCCAGCTGATGGAATTCCTGCCCCAGAGTCCTCCTCGGAGAGCGACTCACACGACTCCTTCACCTGCTCTGAGATGGAGTACGACCGAGAGAAGCCCATGGCTTACAGCTCCAGGATGCCTAAACTGTCTCAGGTCAACGAGTCGGATGCAGATGATGAAGATTATGGCGGCAGGCTAAAGCAGAGGAGGTACTCAAGTCGCAGAGCAGAAGGAGGCCCAAGCACCTCACAATTGCCCTCGACTGAACATTATACCTTACCCCATAAACTAGGTGCCCAAGCTGGGAGTTTTAATTGGGACAACCTGTTGAACTGGGGTCCTGGGTTTGGACATTATGTCGATGTCTTTAAGGATCTGGCTTTACTTCCAGAAAATGCGCCTTCAAAAGATATTGAAATGAACAGTGGTGACGGAGCTGTAgccatttcaaatgaaggaGAGGCAGAACAATACGTA

Function

GO: NA

KEGG:

id description
K16669 FAT4; protocadherin Fat 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113092 lncRNA upstream 98918 6283157 ~ 6283441 (+) True G90703
TU113077 lncRNA upstream 403991 5978164 ~ 5978368 (+) True G90691
TU113030 lncRNA upstream 705115 5676901 ~ 5677244 (+) True G90647
TU112908 lncRNA upstream 919295 5440212 ~ 5463064 (+) False G90561
TU113098 lncRNA downstream 1329 6401734 ~ 6402188 (+) True G90709
TU113180 lncRNA downstream 327627 6728032 ~ 6763072 (+) True G90731
TU113186 lncRNA downstream 474562 6874967 ~ 6892610 (+) True G90737
TU113187 lncRNA downstream 483249 6883654 ~ 6883957 (+) True G90738
TU113178 lncRNA downstream 544067 6944472 ~ 6990143 (+) False AMCG00017486
AMCG00017479 mRNA upstream 11707 6361359 ~ 6370652 (+) True AMCG00017479
AMCG00017477 mRNA upstream 64472 6312782 ~ 6317887 (+) True AMCG00017477
AMCG00017480 mRNA upstream 430567 5950836 ~ 5951792 (+) True AMCG00017480
AMCG00017475 mRNA upstream 565361 5808828 ~ 5816998 (+) True AMCG00017475
AMCG00017474 mRNA upstream 589854 5779880 ~ 5792505 (+) True AMCG00017474
AMCG00017484 mRNA downstream 444154 6844559 ~ 6844962 (+) True AMCG00017484
AMCG00017483 mRNA downstream 444570 6844975 ~ 6846106 (+) True AMCG00017483
AMCG00017486 mRNA downstream 780541 7180946 ~ 7188612 (+) False AMCG00017486
AMCG00017488 mRNA downstream 840038 7240443 ~ 7279492 (+) True AMCG00017488
AMCG00017491 mRNA downstream 1058659 7459064 ~ 7475022 (+) True AMCG00017491
TU112690 other upstream 1714529 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 3686906 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 3686906 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 6170423 207586 ~ 211936 (+) True AMCG00017388
TU111993 other upstream 6283976 93120 ~ 98383 (+) True AMCG00017386
TU113125 other downstream 329333 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 329333 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 329333 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 329333 6729738 ~ 7184790 (+) False AMCG00017486
TU113139 other downstream 404339 6804744 ~ 7184790 (+) False AMCG00017486

Expression Profile