RNA id: AMCG00017479


Basic Information

Item Value
RNA id AMCG00017479
length 1842
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00017479
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 6361359 ~ 6370652 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtGGAAATAACACTGCAGGATGTCAACGACAACCCACCTGTTTTTCCAACTGATATGCTTGATCTAACAATTGAGGAGAATATTGGGGATGGATTTAAGATAATGCAGCTAACAGCTACAGATGCTGATGAGGGACCAAATGCACTAGTGACATATACAATAATCAGTGGAGCAGATGACAGCTTCCGCATTGACCCCGAATCAGGAGACCTAATAGCCACCAAACGTCTGGACAGAGAGCACCGGTCCAAATACTCTCTGCTGGTGCGAGCAGACGATGGAAAACAGTCCTCAGACATGAGAGTTAATATCACGGTCAGTGATGTCAACGACCACACCCCGAAATTCTCCAGGAACGTCTACTCCTTTGACATACCAGAGGACACAACACCAGGCTCCATAGTGGCAGCGATCCTGGCAAGCGATGCCGACTCTGGCCTCAACGGTGAGATAACGTACTCCCTGGACGACGATGACGAGGATGCTGCGTTCCTCCTGAACCCCGTGACGGGCGTCTTCAACGTGACGCGGCCCTTGGATTTCGAAAGCCAGCAGTACTACATCCTCACGGTGCGGGCCGAGGACGGGGGCGGCCAGTTCAGCTCTGTCAGAGTCTACTTCAACATCCTCGATGTCAATGACAACTCGCCCGTGTTCAACACCACCTCCTACAGCACATCTGTGATGGAGAACCTGCCTTCAGGATCCAGCATCATCACTGTGAAAGCCAGTGACGCTGATGACGGTCCAAATGCTCAGATGGCCTACAGCATTGCGTCGGGGGATCCTCTGGCTCAGTTTGACATCGACAGCATGGGAGTTGTGAAAACCAAGCAACCTCTGGACAGGGAGACACAATCCTTCTACAACCTTATGGTCCGAGTTCACGACCTGGCCGTTCCGCCGATGCCACGCTTCACCAGCACGGCCCAGGTGTCCATCATTCTGCTGGATGTCAACGATTGCCCACCCAGCTTTACTTCTCAAAAGATGACCTACATCCAAGAGAACACCCCAGTGGACACCGTGGTGTTTACAGCCCAGGCCAGTGACTCAGACAGCGGACCCAACAGCTATGTCGAGTACTCCCTGCTTAGCTCTCTAGGGAACAAGTTCAGCATTGGGACCATCGATGGCAAAGTTAGACTCACAGGCGAGCTCGACAGGGAGGAGCTCTCTAACTACACACTAACTATCGTAGCAACCGACAAAGGCGAGCCTCCCCTATCCTCATCAATGGACGTCTCTGTGATAGTCCTGGATGTTAACGACAACACTCCTAGCTTTTCCCAGAACATCTACGACATGGAAATCGAGGAGAACACCCTGACCGGCACCGACCTAGTGCAGGTGTTTGCCAGCGACGCTGACGAGGGCACAAATGGGCAGATTCGCTTCTCTCTCATTGGTGGGAATGCAAACTCTGATTTTAGGATCGACTCGGTCACAGGCATGATCTCGGTGGCTAGGCAGCTGGACCGGGAGGTGAGGTCCTCCTATTCTTTGGTGGTTCAAGCAGCAGATCGTGGAAGCAGCCCGAGGACTGACAGAGCCACGGTTAATATAGTGTTACTGGATGTAAACGATTGCACGCCGGTGTTTGAGCTCTCCCCTTACACTGCAAATGTTCAGGAGAACTTAAAAAGTCTCCCACAGGATGTGTTACAGGTCATAGCCCGGGATGATGACCAGGGACCAAACAACAAGCTGACCTATACACTTATTGGAGGGAATGAAGATGGTGCCTTCAGCCTGTCTGCCAGTGGGCACCTAAGCCTTATGAAAAGTCTTGACCGAGAAGCaaaggaaaaatacacattgatCATCACAGCTGCAGATTCA

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113092 lncRNA upstream 77918 6283157 ~ 6283441 (+) True G90703
TU113077 lncRNA upstream 382991 5978164 ~ 5978368 (+) True G90691
TU113030 lncRNA upstream 684115 5676901 ~ 5677244 (+) True G90647
TU112908 lncRNA upstream 898295 5440212 ~ 5463064 (+) False G90561
TU113098 lncRNA downstream 31082 6401734 ~ 6402188 (+) True G90709
TU113180 lncRNA downstream 357380 6728032 ~ 6763072 (+) True G90731
TU113186 lncRNA downstream 504315 6874967 ~ 6892610 (+) True G90737
TU113187 lncRNA downstream 513002 6883654 ~ 6883957 (+) True G90738
TU113178 lncRNA downstream 573820 6944472 ~ 6990143 (+) False AMCG00017486
AMCG00017477 mRNA upstream 43472 6312782 ~ 6317887 (+) True AMCG00017477
AMCG00017480 mRNA upstream 409567 5950836 ~ 5951792 (+) True AMCG00017480
AMCG00017475 mRNA upstream 544361 5808828 ~ 5816998 (+) True AMCG00017475
AMCG00017474 mRNA upstream 568854 5779880 ~ 5792505 (+) True AMCG00017474
AMCG00017471 mRNA upstream 721117 5625024 ~ 5640242 (+) True AMCG00017471
AMCG00017478 mRNA downstream 11707 6382359 ~ 6400405 (+) True AMCG00017478
AMCG00017484 mRNA downstream 473907 6844559 ~ 6844962 (+) True AMCG00017484
AMCG00017483 mRNA downstream 474323 6844975 ~ 6846106 (+) True AMCG00017483
AMCG00017486 mRNA downstream 810294 7180946 ~ 7188612 (+) False AMCG00017486
AMCG00017488 mRNA downstream 869791 7240443 ~ 7279492 (+) True AMCG00017488
TU112690 other upstream 1693529 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 3665906 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 3665906 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 6149423 207586 ~ 211936 (+) True AMCG00017388
TU111993 other upstream 6262976 93120 ~ 98383 (+) True AMCG00017386
TU113125 other downstream 359086 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 359086 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 359086 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 359086 6729738 ~ 7184790 (+) False AMCG00017486
TU113139 other downstream 434092 6804744 ~ 7184790 (+) False AMCG00017486

Expression Profile