RNA id: AMCG00017481


Basic Information

Item Value
RNA id AMCG00017481
length 393
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00017481
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 6772822 ~ 6773798 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACACCATCAATGCCTACCATGGGCAGAACATGGCGTATATAGACCCCCACATATTTGCTGTGGCAGAAGAGGCTTATTTGCAAATGGCCAGaGATGGGCTGAACCAGTCTATTATTGTGAGTGGGGACTCTGGTGCTGGGAAATACGTGTCTGTCAAACACATCATGAGGTACTTTGCCACCGTCAGCAGGTCAGACAGCGAGGCCAGTGTGGAGGAGAAGGTGCTGGCATCCAACCCCATCATGGAGGCCTTTGGAAATGCCAAGACCCCCAGGAATGATAACAGCAGTCACTTTGGGAAGTACATTGTGATTGAGTTCGACTGCAGCTATCGCATCATCGGGGGCCTGCATGAGAACGTACCTGCTGGAGAAATCAGCTGGTGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113113 lncRNA downstream 78716 6693733 ~ 6694106 (-) True G90724
TU113107 lncRNA downstream 375931 6396628 ~ 6396891 (-) True G90718
TU113106 lncRNA downstream 376957 6395648 ~ 6395865 (-) True G90717
TU113105 lncRNA downstream 381593 6390885 ~ 6391229 (-) True G90716
TU113053 lncRNA downstream 992296 5779880 ~ 5780526 (-) True G90670
TU113207 lncRNA upstream 29142 6802940 ~ 7184824 (-) False G90746
TU113208 lncRNA upstream 38323 6812121 ~ 7184824 (-) False G90746
TU113226 lncRNA upstream 38323 6812121 ~ 7184824 (-) False G90746
TU113220 lncRNA upstream 84213 6858011 ~ 6908828 (-) False G90746
TU113196 lncRNA upstream 105066 6878864 ~ 7184824 (-) False G90746
AMCG00017482 mRNA downstream 51429 6718436 ~ 6721393 (-) True AMCG00017482
AMCG00017476 mRNA downstream 561820 6181726 ~ 6211002 (-) True AMCG00017476
AMCG00017472 mRNA downstream 964331 5790848 ~ 5808491 (-) True AMCG00017472
AMCG00017473 mRNA downstream 1005679 5764570 ~ 5767143 (-) True AMCG00017473
AMCG00017469 mRNA downstream 1252667 5491436 ~ 5520155 (-) True AMCG00017469
AMCG00017485 mRNA upstream 203139 6976937 ~ 6981260 (-) True AMCG00017485
AMCG00017487 mRNA upstream 436560 7210358 ~ 7221745 (-) True AMCG00017487
AMCG00017489 mRNA upstream 519058 7292856 ~ 7299945 (-) True AMCG00017489
AMCG00017490 mRNA upstream 677844 7451642 ~ 7453573 (-) True AMCG00017490
AMCG00017492 mRNA upstream 715284 7489082 ~ 7491787 (-) True AMCG00017492
TU113104 other downstream 383784 6387252 ~ 6389038 (-) True G90715
TU112836 other downstream 1549775 5222473 ~ 5223047 (-) True G90502
TU112828 other downstream 1551801 5158384 ~ 5221021 (-) False G90501
TU112835 other downstream 1551801 5158384 ~ 5221021 (-) True G90501
TU112697 other downstream 2228062 4542775 ~ 4544760 (-) True G90400
TU113210 other upstream 114924 6888722 ~ 6914790 (-) False G90746
TU113233 other upstream 338638 7112436 ~ 7113181 (-) True G90749
TU113453 other upstream 1057087 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 1218339 7992137 ~ 7996595 (-) True G90939
TU113572 other upstream 1722697 8496495 ~ 8514955 (-) True AMCG00017520

Expression Profile