RNA id: AMCG00017485


Basic Information

Item Value
RNA id AMCG00017485
length 894
RNA type mRNA
GC content 0.51
exon number 7
gene id AMCG00017485
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 6976937 ~ 6981260 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTCAAGGCACAGCTGAAGACATTCTTCAAAGTGGAcctatttcaattaaaaatggcCACTATGACCAAGTGAGTGTCGAGAAGGCGGCGTTGGAGGAGCACGCCCAGGCCCCAACAAACCATCACTACAAGTCCGAGAAGAGCCTCAGACGAGCTGCACTTCACTATGGATATCGGCTGGACCAGCTGTTTGATATCACAGCAGAGGACATTGAGGCCATTAAGCAGACATATCCCAGCACCCAGAAGAGGGTGCAGGTGAAGGAGGGACACTGTGAGCCAGACCAGGCCCAGCTTGCTGAGGAGACTGAGGAGAAGCAGGAGTCAGTGCTGAGCTTAGAGTTAACCTGTGCCAGCATGCAGAAACTCCACATGAGTGGCCCAGGCCAGAGGATGGAGCCTCACAAGATCATTACAAGTGTGTCATTCACACATGAATTGCAGCTCAACAAGGCCCAGAAGGCTTGGAAACCTGGGCTGAGAAAGGCAAACAAGGTGGCTGATGACAGTCAGGCATTCAATACACAGGAGCTGTTACACAAGGTGCGCAGTATCCTGAACAAGCTGACCCCACAGATGTTCCAGCAGTTGATGCGCAAAGTGACCGAGCTGACCATCGACACGGAGGAGCAACTCAAGGGTGTCATTGATCTAATCTTTGAGAAGGCCATCTCCGAACCCAGCTTCTGTGTCACATACGCGAATATGTGCCACTGCCTTATGAGGCTCAGTGTCCCTAGCATTGACAAGCCGGGAATGACTGTGACTTTCCGCACGCTCCTGTTGAACTGCTGCCAGAAGGGGTTTCAGAAAGAGAAGGATGACAACGAGGTCTTCGAGAAGAAGCAGAAGGACCTGGATgcatccatttttatatataaagcaatctAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113220 lncRNA downstream 68109 6858011 ~ 6908828 (-) False G90746
TU113243 lncRNA downstream 92969 6883642 ~ 6883968 (-) True G90759
TU113235 lncRNA downstream 99969 6760655 ~ 6876968 (-) True G90751
TU113113 lncRNA downstream 282831 6693733 ~ 6694106 (-) True G90724
TU113107 lncRNA downstream 580046 6396628 ~ 6396891 (-) True G90718
TU113217 lncRNA upstream 49513 7030773 ~ 7184824 (-) False G90746
TU113209 lncRNA upstream 71954 7053214 ~ 7184824 (-) False G90746
TU113246 lncRNA upstream 84625 7065885 ~ 7124174 (-) True G90762
TU113271 lncRNA upstream 224360 7205620 ~ 7205861 (-) True G90783
TU113285 lncRNA upstream 240568 7221828 ~ 7226843 (-) True G90796
AMCG00017481 mRNA downstream 203139 6772822 ~ 6773798 (-) True AMCG00017481
AMCG00017482 mRNA downstream 255544 6718436 ~ 6721393 (-) True AMCG00017482
AMCG00017476 mRNA downstream 765935 6181726 ~ 6211002 (-) True AMCG00017476
AMCG00017472 mRNA downstream 1168446 5790848 ~ 5808491 (-) True AMCG00017472
AMCG00017473 mRNA downstream 1209794 5764570 ~ 5767143 (-) True AMCG00017473
AMCG00017487 mRNA upstream 229098 7210358 ~ 7221745 (-) True AMCG00017487
AMCG00017489 mRNA upstream 311596 7292856 ~ 7299945 (-) True AMCG00017489
AMCG00017490 mRNA upstream 470382 7451642 ~ 7453573 (-) True AMCG00017490
AMCG00017492 mRNA upstream 507822 7489082 ~ 7491787 (-) True AMCG00017492
AMCG00017499 mRNA upstream 606691 7587951 ~ 7594082 (-) True AMCG00017499
TU113210 other downstream 62147 6888722 ~ 6914790 (-) False G90746
TU113104 other downstream 587899 6387252 ~ 6389038 (-) True G90715
TU112836 other downstream 1753890 5222473 ~ 5223047 (-) True G90502
TU112828 other downstream 1755916 5158384 ~ 5221021 (-) False G90501
TU112835 other downstream 1755916 5158384 ~ 5221021 (-) True G90501
TU113233 other upstream 131176 7112436 ~ 7113181 (-) True G90749
TU113453 other upstream 849625 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 1010877 7992137 ~ 7996595 (-) True G90939
TU113572 other upstream 1515235 8496495 ~ 8514955 (-) True AMCG00017520
TU113686 other upstream 1774028 8755288 ~ 8755907 (-) True G91119

Expression Profile