RNA id: TU113171


Basic Information

Item Value
RNA id TU113171
length 649
RNA type TUCP
GC content 0.47
exon number 2
gene id AMCG00017486
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 6729738 ~ 7188643 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTACACTTTTGGTGGCGGCACCAGACTTGATGTTGGAAGTAATACTTCTCCAGTTCTTACAGTCTTGCCGCCATCTGGCGATGAGCTGAAAACCAGGAAAACTGCCACACTGATGTGCCTGGCCAATAAAGGTTTCCCGTCTGACTGGAAGCTGCATTGGAAATTGGATGGCAGCACTGTTAGCAGTGGTATCACCACCGGTGCCGGGATCCTGGGGAGTGATGGCAAGTACAGCTGGAGCAGCACCCTGACGCTAACAGAGGACCAGTGGAAGAGAAAGCCGACGGTGACGTGCGATGCCAGCCAGAAAGACCAGACTACCGTTACAAAGGTGCTGAAGGCATCTGAGTGTTGAATATGAGCCAGGACAAGGGCACCCCCAGCTTCATCACGTCATAATGTAGAATTGCTTAGTACATTGTCTTATCAGTTTCAGTGCAATCAGACAGTAACCACAGGCTTTGTTTCGATGCCTTGTGCGAATCAACGCTCAGactggctgttttgttttttaatctcaatAGACATGCTCTACTTTGATTCCCCATCACATGTATTAGTGTATGTTTGTCCTGTTCCCTCTGTATGTGCTGTTAGTGCAAGTCAATAAATGActttaataaagacattttgaatcatgaatatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113192 lncRNA upstream 29342 7112416 ~ 7152744 (+) True G90743
TU113182 lncRNA upstream 171025 6974661 ~ 7011061 (+) True G90733
TU113178 lncRNA upstream 191943 6944472 ~ 6990143 (+) False AMCG00017486
TU113186 lncRNA upstream 289476 6874967 ~ 6892610 (+) True G90737
TU113187 lncRNA upstream 298129 6883654 ~ 6883957 (+) True G90738
TU113149 lncRNA downstream 730 7185520 ~ 7188643 (+) True AMCG00017486
TU113357 lncRNA downstream 439902 7624692 ~ 7626452 (+) True G90857
TU113385 lncRNA downstream 487353 7672143 ~ 7672373 (+) True G90878
TU113386 lncRNA downstream 493109 7677899 ~ 7678465 (+) True G90879
TU113413 lncRNA downstream 605669 7790459 ~ 7790658 (+) True G90905
AMCG00017483 mRNA upstream 335980 6844975 ~ 6846106 (+) True AMCG00017483
AMCG00017484 mRNA upstream 337124 6844559 ~ 6844962 (+) True AMCG00017484
AMCG00017478 mRNA upstream 781681 6382359 ~ 6400405 (+) True AMCG00017478
AMCG00017479 mRNA upstream 811434 6361359 ~ 6370652 (+) True AMCG00017479
AMCG00017477 mRNA upstream 864199 6312782 ~ 6317887 (+) True AMCG00017477
AMCG00017488 mRNA downstream 55653 7240443 ~ 7279492 (+) True AMCG00017488
AMCG00017491 mRNA downstream 274274 7459064 ~ 7475022 (+) True AMCG00017491
AMCG00017494 mRNA downstream 420498 7605288 ~ 7606199 (+) True AMCG00017494
AMCG00017496 mRNA downstream 457485 7642275 ~ 7647260 (+) True AMCG00017496
AMCG00017493 mRNA downstream 470593 7655383 ~ 7658125 (+) True AMCG00017493
TU112690 other upstream 2514256 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 4486633 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 4486633 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 6970150 207586 ~ 211936 (+) True AMCG00017388
TU111993 other upstream 7083703 93120 ~ 98383 (+) True AMCG00017386
TU113384 other downstream 483393 7668183 ~ 7671850 (+) True G90877
TU113388 other downstream 507795 7692585 ~ 7693347 (+) True G90881
TU113473 other downstream 947578 8132368 ~ 8132854 (+) True G90955
TU113646 other downstream 1502907 8687697 ~ 8689406 (+) False AMCG00017526
TU113671 other downstream 1566923 8751713 ~ 8753781 (+) False AMCG00017527

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1496821 False 621 TUCP 0.49 2 NC_048579.1 58634282 ~ 58676763 (-)
eurasian perch (Perca fluviatilis) unassigned_transcript_1703 True 461 C_gene_segment 0.60 2 NW_024375538.1 90 ~ 1419 (+)
tiger barb (Puntius tetrazona) unassigned_transcript_1703 True 72 tRNA 0.64 1 NC_056709.1 2872571 ~ 2872642 (-)