RNA id: AMCG00017487


Basic Information

Item Value
RNA id AMCG00017487
length 2497
RNA type mRNA
GC content 0.48
exon number 9
gene id AMCG00017487
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7210358 ~ 7221745 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTTGTTTGAAGAGCTACACCGTGGGATGCTGGGAAATGTATTTCGCACTGAACTACAATTCCCATCAACCCCCTGGTGTTGGTAGACACAACAGCGATTTTTGCCAGACTTCCTGGAGTAGCGGAGGCCAGCGCGCTAAGGGGCCGGGCTATGAGGCTTCAAAGTGGGATCTGCGTTACCCTCTCAGCCGGATATTTTGGCGCAGCTGTGCGTGGGAGGCAGGGATTGTCTTGTGTTAACAGACTCGGTGAGAGACACGTGTTTTTCGGTCGACGCTGCAGCAGCGGGGCGGCCATGGCAGAAGAGGCGAAGAAACGGGCAGGCTATGCCGCGGTGGACAATCATGTGCAGAACAACCAGGCTGTAGGAGTGGGCAGCGGCTCCACTATTGTTTATGCTGTGGACAGACTCGCGGAGAGAGTGCGACAAGAGAAGCTGAACATAGTGTGTGTCCCCACGTCTTTCCAgGCTCGCCAGCTGATTCTGCAGCATGGTCTCACGCTGACTGACCTCGACAGACACCCGGAGCTGGACGTGGCCATCGATGGGGCAGACGAGGTCGACTCTGAGCTCAACCTCATCAAGGGTGGCGGGGGCTGTTTAACTCAGGAGAAGGTTGTTGCCGGTTGTGCCAAGTGCTTCATTGTCATCGCAGACTACAGGAAGGACTCCAAGGCCCTCGGGCAGCAGTGGAAGAAGGGCGTGCCCATTGAGGTCATCCCCATGGCTTACGTGCCCGTTGCCAGGGCGATCGAGCGGCGGTTTGGGGGGGCGGCGGAGCTGCGCATGGCCGTCAGCAAAGCGGGCCCAGTGGTGACTGATAACAGTAACTTCATCCTGGACTGGAAGTTTGAGAAGGTGCAGAACTGGAAGGAGGTGAATACTGCAATCAAAATGATCCCAGGTGTGGTGGAGACGGGGTTGTTCATCAGCATGGCAGAGCGGGTGTATTTTGGCATGGAGGACGGCACTGTGACCACGAGAGACTGTCCACAGCACTGAGGGTCAGCTGGCCAACCGGACACCCAACGCCCCTTCCTCGATCTTCACACGCATGCCACTCACCTCAAGTGCCCCTCCCTGAACCAGTCTTCCAGTCCTCCGGCACCAGCGAATGGGCCTCCGCCTTTTGATTCGCTCAGGCAGTATCCTGAAGGGAAGGTTTTTAGATGGTAGCCAACTCTTCCAAGTGGCCTTGATCTCCCATTTCTGTCAGTGGCTTTCCTGTAAAGTTGTCTCCATGCCATCTTGCATCGCATCCTATCCTCTTAGGAGGAAGGCTGGGGGATATCGTGCCTGTTCGGTAATGGACAGTCATACCCAATTCACACCGAAGTTGCCTTAATCTGCAGTTTTCAGAGGACCAATTTAGCCAGCCCTCCACACTTAGGTTTGGGGGTCCTGTCATGTGCTGTTGTACCAAGAAGTTGGTGACACCTCTTTCTTTGTCATGCTTGGTTTACCTAATCTCAGCCGTCTCTTTACGTGTATTCACAGCTGCTGATACTGTCACCTGTGCGTTCTCTGTACTGGAAAGTGGAAAGTTACATTTACATCCGCATGCGTAGTATTGTCGTCCATGGATATCGTTAACTCCAGTTTTTCAGTGAGCATGCAGAAGACCGAGACACTCAATCTGCGTATTCTGTCTGCAGTCTGAGCAGCCAGTGTATCGTGGTTTCTGGTGCGCGCCGGCGGCGTTAAACTGCAGAGTAGCGCTTCTGTCAATTTTTACTTTTAGTGATTCTGTATTGAAAGATGCGTATCATCAGTGATATCACATGTACACTTCTCATGTTTTCCCATTTTTGGTTATTAATCATGAATATCTGTGAAATACTTCAGTGTTCCTGCAGCAAAGGGTTGAGATTTTCTACAGCACACacttttaaatcagaaaataattgcattttaatattacatctCACCTCTCAATATCAATTGTAATTTCAAgagctttcctttttttgtcaAGTAATTTGAATTCCTAAAAATTCCTGCattgaattaaagaaaatgtctctGAAGCCAAAATTTTAGTTAATCTGCCTTGCTTTAATCTGAACAAAGTATTCATCTGTTTttcttactactactaatgtGTTCTGTGCCTGAAAGGATAGTATGAGATCTATTCGTAAAACCTGAAAGATGTTAAGACCCACATGATTACAAGCTCTCACAAAGTCTTATGGCTGATCCGttgcaaatcatttattttataaaccaaAAGTACCTCTTAATTTGCCTGTCAGTCTGTAGCAAGGCTGAATGATGAGATTATATTGGGTTCATTGCCCAAGCACTAAGTTACCAAACTGGCATGGGTTTTGTTATTGTACCACCACACTGTGAACTCGTTTCACAAGATTTATGGTTACAAGTTTGCTTTATACTTGTAAGTGTAAAGCAGATAAATCTATTGTTGTCAAAGTAGTGTCACTTACCATATTCTATACTAAACCGCACTCTACAATAAATGACTGCAGACTTTGA

Function

GO:

id name namespace
GO:0009052 pentose-phosphate shunt, non-oxidative branch biological_process
GO:0004751 ribose-5-phosphate isomerase activity molecular_function

KEGG:

id description
K01807 rpiA; ribose 5-phosphate isomerase A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113271 lncRNA downstream 4497 7205620 ~ 7205861 (-) True G90783
TU113201 lncRNA downstream 21710 6974660 ~ 7188648 (-) True G90746
TU113218 lncRNA downstream 25534 6733235 ~ 7184824 (-) False G90746
TU113222 lncRNA downstream 25534 6733235 ~ 7184824 (-) False G90746
TU113207 lncRNA downstream 25534 6802940 ~ 7184824 (-) False G90746
TU113285 lncRNA upstream 83 7221828 ~ 7226843 (-) True G90796
TU113297 lncRNA upstream 44322 7266067 ~ 7282477 (-) True G90805
TU113310 lncRNA upstream 101985 7323730 ~ 7324107 (-) True G90817
TU113391 lncRNA upstream 446435 7668180 ~ 7670591 (-) False AMCG00017497
TU113392 lncRNA upstream 471838 7693583 ~ 7694005 (-) True G90885
AMCG00017485 mRNA downstream 229098 6976937 ~ 6981260 (-) True AMCG00017485
AMCG00017481 mRNA downstream 436560 6772822 ~ 6773798 (-) True AMCG00017481
AMCG00017482 mRNA downstream 488965 6718436 ~ 6721393 (-) True AMCG00017482
AMCG00017476 mRNA downstream 999356 6181726 ~ 6211002 (-) True AMCG00017476
AMCG00017472 mRNA downstream 1401867 5790848 ~ 5808491 (-) True AMCG00017472
AMCG00017489 mRNA upstream 71111 7292856 ~ 7299945 (-) True AMCG00017489
AMCG00017490 mRNA upstream 229897 7451642 ~ 7453573 (-) True AMCG00017490
AMCG00017492 mRNA upstream 267337 7489082 ~ 7491787 (-) True AMCG00017492
AMCG00017499 mRNA upstream 366206 7587951 ~ 7594082 (-) True AMCG00017499
AMCG00017500 mRNA upstream 403826 7625571 ~ 7639260 (-) True AMCG00017500
TU113233 other downstream 97177 7112436 ~ 7113181 (-) True G90749
TU113210 other downstream 295568 6888722 ~ 6914790 (-) False G90746
TU113104 other downstream 821320 6387252 ~ 6389038 (-) True G90715
TU112836 other downstream 1987311 5222473 ~ 5223047 (-) True G90502
TU112828 other downstream 1989337 5158384 ~ 5221021 (-) False G90501
TU113453 other upstream 609140 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 770392 7992137 ~ 7996595 (-) True G90939
TU113572 other upstream 1274750 8496495 ~ 8514955 (-) True AMCG00017520
TU113686 other upstream 1533543 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 3139555 10361300 ~ 10497104 (-) True AMCG00017556

Expression Profile