RNA id: AMCG00017488


Basic Information

Item Value
RNA id AMCG00017488
length 3232
RNA type mRNA
GC content 0.61
exon number 18
gene id AMCG00017488
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7240443 ~ 7279492 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACAGCGCCTGGCCGGGTGTGCGctggtgcggtgcggtgcggtgcgTAACTGAGGATGGGGCCAAGCCCAGATCCTGCAGAGATCTCTGCGGAGTACGTGTGCGATGGGGACCAGCTGCTTACAGGGCTCTGCTCTACTGCACACCCACTGGCCAGAAGTCTCTGGTGATCATCAGCACCCTGGACGGCCGGATCTCAGCCCTGGACCCAGAGAATCAGGGCCGGAAGCAGTGGGATCTGGATGTGGGTTCAGGGTGCCTGGTCTCCTCCAGCCTCAGCAAGCCAGAGGTTTTTGGGAACAAGATGATCATTCCTTCCCTGGAGGGGGCGCTGTTCCAGTGGGACCGTGATCGGGAGAGCATGGAGTCCGTGCCCTTCACAGTGGAGTCACTGCTGGAGTCCTCTTACCGTCTCAGGGAGGACACTGTGCTCGTCGGGGGGAAGTCTCTCACCACATACGGGCTGGGAGCCTATAGCGGGAAGCTGAGGTATATCTGCTCAGCGGTGGGTTGCAGCcgctgggaggaggaggagccagagccagaggacgtgctgctgctgcagagaaCACAGAAGACGGTGCGTGCTGTCGGGCCCCGCAGCGGCAATGAGAAGTGGAACTTCAGTGTGGGCCACTTTGAGCTGAAGTTCGTGCCAGAGGTGCAGTCCGGGGTGAACTTCCTGGAAGGGGAGTCGCCAGGAGGGGGGACTCGGCGGGAGGGACAGCGGGTGATCCGGGATGATGATGAGCCGAAGGCCGAGACCAGGGACCTCATCATCAAGGTGTCGGTGCCTGACTGGAAGGTTATGGCCTTCAGTAACAAGCCAGGAGGCCAGTTGGTGTGGGAGCATCAGttctgcACTCCTATTGCCTCTGCCTGGCTGGTACGCGGAGGCAAGGTGATCCCCATCAGCCTTTTTGACGACACCAGCTACACCTCGCGCACTGACTCTGtgctggaggaagaggaagagattGTGgaggcggctcgtggtgccacAGAGTCCAGCATCTACCTGGGGATGTTCCGAGGGCAGCTGTATCTCCAGTCCTCTGTCCGTATCTCGGAGAAATTCCCCACCAAGTCCAAAGCCCTGGACAGCAGGAGCTCCGAGAATGGCATCATCTCTCTGCCCACCGTCAAGTGGAAGCCACTGATCCATTCCCCGTCGCGTACTCCAGTGCTGGTGGGATCTGAGGAGTTTGACAAATGTCTGAACAATGATAAGTTCTCCCACGAGGAGTACAGCAATGGAGCCCTGTCTGTCCTGCAGTACCCCTATGACAATGGGTACTACTTCCCGTACAGTAAGCGTTACAGAGGGAGGCGGGAGGCGGCGGTGAGCTTGCTGTCGGGGGATGCGTCCCGGGGGGAGCTCCGTAGGAAGGACcccgtgctgctgctgccctggTGGAAGGAGATCCTGGGCACCATCGTGTTCTGCATCGCTGCCACCACCTACATTGTCCGCAAGTTCTTCCACCCGCCCACGTCCCAAGTCCGGCAAAGGAAGGAGTCTGAGACACAGTGCCAGACCGACAGCAAATTCGAGGAGCAGATGGAGGACCCTAAGGAGGTGGTTGTCAGTGAGAGCCGGAGCAGTGAATACGTGTCGAGGTATCTGACGGACTTTGAGCCGGTGCAGTGTCTGGGCCGCGGGGGGTTTGGCGTGGTGTTCGAGGCACGGAACAAAGTGGACGACTGCAACTATGCCATCAAGAGGATTCGCCTCCCCAACAGGGAACTGGCTCGGGAGAAGGTGATGAGGGAGGTTAAGGCCCTAGCCAAGCTGGAGCACCCTGGCATCATCCGCTACTTCAACGCTTGGCAGGAGACCCCACCTGAGGGCTGGCAGGAGGAGATGGATCAGCGCTGGCTCAAGGATGCCAGTGCCACAGACTGGCCACTCAGCTCCCCAGAGCAGATGGAGGCACTATCAGTGAAGGTACCGGTGCCCAAGCCCCTGCCTCTGGACATTTCTTCACTTGAGGGAGCAACAGGGAACTGTTTGGGTGTCCGTACTGCACAGCagccctccttctccctcctgctctcctcttcctccacatCCACCATGGACCACAAGGGCTGTGGAGATCCTTGCGATGTCAGCCTGCTTCATGGGCATGACAGCTTCCTGTCGGAGGGGGACAGCCAGGTCGAGGCAGAGGGCTCAGACTCGCCACACTCCTATGAGCTGTGCCCGCCGCACGGCCCCGAGGACTgtacctcctcctcctttgACATCGTTTTCGAGGACTCGGGCTGCGATGACACCTCAGAGCGTGCAGAGCCGGGCAGCCACGGCACGGTGACGGAGAGGCACAGCTCGGAGTCCCGGACCCAGACCCGCGAGCCAAGCGCCGTCaccctctccagctcccctcCGCGGCCGACCAGCCTGAGCCTTGGCCCTGCTCCCCGCCTCACACCCGTGCTGCCCTCCCAGCGCCCCCGGCCCCTGACCTCCCCCAAGGTGTTCCTGTACATCCAGATGCAGCTGTGCCGCAAGGAGAACCTGAAGGACTGGATGGCTCAGCGCTGCCGGCCAGAGCAGCGGGACCGGGCTGAGTGCCTTGGCATCTTCCTGCAGATCGCAGAGGCGGTCGAGTTCCTGCACAGCAAAGGCCTCATGCACAGAGACCTGAAGCCCTCCAATATCTTCTTCACAGTAGACGACGTGGTGAAGGTGGGTGACTTCGGTCTGGTGACTGCCATGGACcaagaggaggatgaggacgagGGGCCAGTGCTGACACCCATGCCAGTCTATGCCAGGCACACCGGCCAAGTGGGCACCAAGCTGTACATGAGCCCAGAGCAGCTGTCGGGGAACTCGTACTCGCACAAGGTGGATATCTACTCCCTTGGGCTAATCCTGTTTGAGCTGCTCTGTCCCTTCAGCACACAGATGGAGAGAGTGCAGACATTAACAGAAGTGAGGAACCTGAAGTTCCCCAAGGTGTTTTCCCAGAAGAACGTGCAGGAGCTCGGGATGGTGCGACAAATGCTGTCACTGAGCCCGGGCGAGCGGCCGGAGGCGATCGAGATCACCGAGACACCCCTGTTCCAGGAGCTGGAGGTGCCCAGCAGGCTGGTCCTGAGGCAGCGCTCCCGCACGTACAGTTCCTCCGGGGGACGCCACGCACGCCAGCCTAGCAGCTGAGACCTCGGGGCTGGACCCCCACACACTGGCCGTCTGTCTACATAACACTGTCTTGAGCCGG

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08860 EIF2AK3; eukaryotic translation initiation factor 2-alpha kinase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113150 lncRNA upstream 51800 7010723 ~ 7188643 (+) False AMCG00017486
TU113149 lncRNA upstream 51800 7185520 ~ 7188643 (+) True AMCG00017486
TU113192 lncRNA upstream 87699 7112416 ~ 7152744 (+) True G90743
TU113182 lncRNA upstream 229382 6974661 ~ 7011061 (+) True G90733
TU113178 lncRNA upstream 250300 6944472 ~ 6990143 (+) False AMCG00017486
TU113357 lncRNA downstream 345200 7624692 ~ 7626452 (+) True G90857
TU113385 lncRNA downstream 392651 7672143 ~ 7672373 (+) True G90878
TU113386 lncRNA downstream 398407 7677899 ~ 7678465 (+) True G90879
TU113413 lncRNA downstream 510967 7790459 ~ 7790658 (+) True G90905
TU113414 lncRNA downstream 526886 7806378 ~ 7809418 (+) False AMCG00017508
AMCG00017486 mRNA upstream 51831 7180946 ~ 7188612 (+) False AMCG00017486
AMCG00017483 mRNA upstream 394337 6844975 ~ 6846106 (+) True AMCG00017483
AMCG00017484 mRNA upstream 395481 6844559 ~ 6844962 (+) True AMCG00017484
AMCG00017478 mRNA upstream 840038 6382359 ~ 6400405 (+) True AMCG00017478
AMCG00017479 mRNA upstream 869791 6361359 ~ 6370652 (+) True AMCG00017479
AMCG00017491 mRNA downstream 179572 7459064 ~ 7475022 (+) True AMCG00017491
AMCG00017494 mRNA downstream 325796 7605288 ~ 7606199 (+) True AMCG00017494
AMCG00017496 mRNA downstream 362783 7642275 ~ 7647260 (+) True AMCG00017496
AMCG00017493 mRNA downstream 375891 7655383 ~ 7658125 (+) True AMCG00017493
AMCG00017495 mRNA downstream 384216 7663708 ~ 7667075 (+) True AMCG00017495
TU113125 other upstream 55653 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other upstream 55653 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other upstream 55653 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other upstream 55653 6729738 ~ 7184790 (+) False AMCG00017486
TU113139 other upstream 55653 6804744 ~ 7184790 (+) False AMCG00017486
TU113384 other downstream 388691 7668183 ~ 7671850 (+) True G90877
TU113388 other downstream 413093 7692585 ~ 7693347 (+) True G90881
TU113473 other downstream 852876 8132368 ~ 8132854 (+) True G90955
TU113646 other downstream 1408205 8687697 ~ 8689406 (+) False AMCG00017526
TU113671 other downstream 1472221 8751713 ~ 8753781 (+) False AMCG00017527

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011573 False 3970 mRNA 0.52 17 NC_007124.7 13945219 ~ 14003334 (+)