RNA id: AMCG00017494



Basic Information


Item Value
RNA id AMCG00017494
length 912
RNA type mRNA
GC content 0.61
exon number 1
gene id AMCG00017494
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7605288 ~ 7606199 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTCTCCGCCAGCTCCCAGCTCTCCCTGCGCACGGCGCTGGACAGTGTGCTCACATGGACCAGCCTGAAGTGCAGCAAGACTCCAGCCCAGGAGAGACCACTAGCCCGCAACAAGGACATCTTCAGTGTTGTGGTCACGCCTGACCGCATTCCCCAGTTCTTCATACCTTCACTGGAGGTGGAGCATTTCTTCGTGCAAGTCAACAACAGGGAGAGAGGGCAGTCCGACTGTGCGTCGCCTGAGCTGCCTGTCCCCTGCTGCACCCCACCCAACAGGAACACCCCTGAGTCCTGCAGTGCCCGTAGAGGACTGCCGGCGCGCAGGGAGACTCTGTGCAAGAAAGCGTCCTTCCAGTCGTTTGACGGGTCGTTCTTCCCCCTGGAACTGGAGCGAGCTGCCGACCATTCCGACCCCGCCACTCGGGCTGCCCTGTCGTTGCCCCACCTGGCAAAGATCACCACCCCATACGGCTTCCTGGCGTTGGGGGAGAGCCCGAACATCCGCAGGAAGGAGTCCCTCTTCTTCGAGCAGGACCCCCAAGACATCCGTATGCTGCTGTCCCACCGCAAGAAAAGTTATTCCCTCTCCAGGAGCCGCTCATCCCCTGTTGGCGGCTCTAAGGAGCAACAACCCCCGGCCGAGCAGGAGGAACCCCTGGCACATTGTATTCGCTGCACCCGCTCAGTGTCCTGGGATGTCATTTGCAAAACCACCTCAACCTCCCAAGCGCCCACTCCcactgccactgccactgccactcccactcccaccaGCAAGCCTGCGAAGAAGCGATTCCAGGGCCTGATCAAGAAGCACATCTCCAGCATCAAGCGTATGCGCTCCAGCGGTTTCTCGGCCGAGAAAACACGCGTCCCTTTTAAAAGGGCACAGAGCCAGCCTGTCCTCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU113150 lncRNA upstream 416645 7010723 ~ 7188643 (+) False AMCG00017486
TU113149 lncRNA upstream 416645 7185520 ~ 7188643 (+) True AMCG00017486
TU113192 lncRNA upstream 452544 7112416 ~ 7152744 (+) True G90743
TU113182 lncRNA upstream 594227 6974661 ~ 7011061 (+) True G90733
TU113178 lncRNA upstream 615145 6944472 ~ 6990143 (+) False AMCG00017486
TU113357 lncRNA downstream 18493 7624692 ~ 7626452 (+) True G90857
TU113385 lncRNA downstream 65944 7672143 ~ 7672373 (+) True G90878
TU113386 lncRNA downstream 71700 7677899 ~ 7678465 (+) True G90879
TU113413 lncRNA downstream 184260 7790459 ~ 7790658 (+) True G90905
TU113414 lncRNA downstream 200179 7806378 ~ 7809418 (+) False AMCG00017508
AMCG00017491 mRNA upstream 130266 7459064 ~ 7475022 (+) True AMCG00017491
AMCG00017488 mRNA upstream 325796 7240443 ~ 7279492 (+) True AMCG00017488
AMCG00017486 mRNA upstream 416676 7180946 ~ 7188612 (+) False AMCG00017486
AMCG00017483 mRNA upstream 759182 6844975 ~ 6846106 (+) True AMCG00017483
AMCG00017484 mRNA upstream 760326 6844559 ~ 6844962 (+) True AMCG00017484
AMCG00017496 mRNA downstream 36076 7642275 ~ 7647260 (+) True AMCG00017496
AMCG00017493 mRNA downstream 49184 7655383 ~ 7658125 (+) True AMCG00017493
AMCG00017495 mRNA downstream 57509 7663708 ~ 7667075 (+) True AMCG00017495
AMCG00017503 mRNA downstream 95915 7702114 ~ 7712194 (+) True AMCG00017503
AMCG00017508 mRNA downstream 200189 7806388 ~ 7813639 (+) True AMCG00017508
TU113164 other upstream 420498 6804744 ~ 7184790 (+) False AMCG00017486
TU113384 other downstream 61984 7668183 ~ 7671850 (+) True G90877
TU113388 other downstream 86386 7692585 ~ 7693347 (+) True G90881
TU113473 other downstream 526169 8132368 ~ 8132854 (+) True G90955
TU113646 other downstream 1081498 8687697 ~ 8689406 (+) False AMCG00017526
TU113671 other downstream 1145514 8751713 ~ 8753781 (+) False AMCG00017527

Expression Profile