RNA id: AMCG00017496


Basic Information

Item Value
RNA id AMCG00017496
length 2410
RNA type mRNA
GC content 0.54
exon number 8
gene id AMCG00017496
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7642275 ~ 7647260 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGCCGTGGCCGACCGGCTCTCCTGTGCTCGGTGTGCCGGGGCAGCTGTGCGCACACTTGCTCTGCGCAGCTGGAGAATGATCGAGGTGGTGGCCACTCTGTCTCGGGGGCCTGTGTTCCTGGCTGGAGAGGTGCTCGAGTGTGTGATCACCTTCACGAACCCCCTGTCCCACCTCTCCACCTCCGCCAGCAGTGAGATGCTGGCATGGGCCAGTGCGCAGATCCACTGCCAGTTCCATGCCAGTGAGAGCCGGGTAGCACTGCCCAGCCAGGGGGCAAAGCAGGACGTGCAGGCCGAGAGCAACACGGTACTCATCCCCAGCAGAGACTCATACTGTGAGACGGTGCCAGTAGACGGCCCCCCCACATTCAGAGGCCAGTCGGTGAAGTACGTCTACAAACTGACGATTGGCTGCCAGCGTGTCAACTCCCCCATCAAACTCCTACGGGTGCCCTTCAGAGTGATGGTGCTCCACGgtATCCCCGAGCGTCCCTTCCCCCAGGACGAGGCCGTGGCCCCCTCGAACCCTTtcctggaggaagaggaaggagggCGGCGAGACTCGCGCCTGCTGGAGAAAGCCATGGACCTTCTCATGATCAACACCTCGCGCCGGAGTCCCAACCTGTTCAACATCACCAACGCCAGGGGGAAAGTGGGCAAGTTCTGTATCTTCAAGATCATGTACCGCCTGGGCGAGGACATCATCGGCACCTTCACCTTCTCGGAGGGGGATATCCCCTGCCTGCAGGAGGCCTGCCTGCACACGGCTGCCAGCCACTTCTCCCTGCCCGTGCCGCTCAACGCGACGCCCGGCTTCAGTACGGACATCGTGTCTCTGCGGTGGCGCCTGCACTTCGAGTTTGTGACGGCCCGCGAGCCCGTGGAGCCGGCCACGGTCTTGCAGAACGAGTCTGAGGTCACCGTGTGGACGGGGGCAGAGCATGTGGACGTTGACACCTTCAGCTGGGACTTACCCATCAAGATTCTGCCCACAAATCCCGCTCTGGCTTCCTACGTGTCTCAGTTCTCGGGGACCAATAGCATCCACATCTGAGCGGACTGAACCACTTCAGGGGAGAGGGCCACCTGGCCTGGACTCGGCCGTCTTCTcgtgagagacagggagagtgGGGCTGTCTTCTCTGGTACAGACTCTCTACTCCTGCCCGAGCCTCGGTTGCTTCTTAATTAACCTTCAAACTGGGCAAACTAAAAGCGTGGTTTTAATTCAGGAGTGTTGATCCGTCTCTGATCTGAAGACACCTGTCAAGCCGGCAGGACTGCATTCTTCAAGGACAAGAAGGGGAGTGAGGGCTGGTGATACAGGGTGATCTACTGATAGAGACAAGGCAACGTGTGCCGGCGCCCTGACGCCTGCCCTACCTCCCAGGGACTGAACCACCCACATTTCTCTCGTACCGCAGTTCTGCtgcttttaaagacaaaaaaaagctttgtttcCTTGTCATATTTCTTAATTCTCTTTATCTGcagggtttttgtttgtttgtttttgtatttatttctgtgtgtctATGAGCTCTGGATCAGAACTTCTGAAACAAAGTTATGCAGGCGCCCAGACAGGCCCCTGGTACTCCTCTCCCAAGATCAGTTGGCGGTGACCTGTGCCGAACTCGGGTCACCTTCCCGAGGAAACGGAGCGTTCCGTTTCTCCGGGAGCTGTTCACTGTGTGAAGAGGCTGACGCCACGGCAAACGGTGCTGTTTTTAACTACAAGCACAAGTATTCAGAGTAATGTAAATGCACAGATTATATCTCTTAAAACTATACAACCgatcaaaagtatttaaattgtaatccTTTTTACTGCTTCAGTGATGCACTCAATGATAATAGACACCACCGTTGTTTTCCATATTGGACATGTCTAATCAGTGGTTTCTGTCCACTGCCAATTATTTTGGGAGAGTTGTACCTACAATTGTTTTCTAGTGGCCGCACATCAGGTGGACAAGGTAAACCCACTCCTACAGTACAGAGTACAGAGTGCTGTGAGATCCTTTGGAATAAAAAGCAGTATATgcaaggtattattattattatcattattaatattattggtTAATTCTGTATGATGTGTTGGTTTCCTGAGGGGAAGcccaagtgtgtgtgtttaacccCTCAGTGGTCGGCGGCCTCAGTTGAGGTCCCCCGCTGTGCTGTGACTGCAGTGTTAATGGCAGGGCCCTGTGCCGACTGCCCTATACCTCCCAGGCTCCAGCACTGACCTCTGCATGCTGGACGGgactgtgtgtccagtgtgtgctgtgctggacTGGCTGCCTGCTATCTGCCCCAGACTGGGTGCTATTGCATTGAGAGTATATGTTTTCCAAATCTCATGTCtatcatgtttaataaaatgtttcaatctCACA

Function

GO: NA

KEGG:

id description
K20477 RGP1; RAB6A-GEF complex partner protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113357 lncRNA upstream 15823 7624692 ~ 7626452 (+) True G90857
TU113150 lncRNA upstream 453632 7010723 ~ 7188643 (+) False AMCG00017486
TU113149 lncRNA upstream 453632 7185520 ~ 7188643 (+) True AMCG00017486
TU113192 lncRNA upstream 489531 7112416 ~ 7152744 (+) True G90743
TU113182 lncRNA upstream 631214 6974661 ~ 7011061 (+) True G90733
TU113385 lncRNA downstream 24883 7672143 ~ 7672373 (+) True G90878
TU113386 lncRNA downstream 30639 7677899 ~ 7678465 (+) True G90879
TU113413 lncRNA downstream 143199 7790459 ~ 7790658 (+) True G90905
TU113414 lncRNA downstream 159118 7806378 ~ 7809418 (+) False AMCG00017508
TU113429 lncRNA downstream 203908 7851168 ~ 7851374 (+) True G90915
AMCG00017494 mRNA upstream 36076 7605288 ~ 7606199 (+) True AMCG00017494
AMCG00017491 mRNA upstream 167253 7459064 ~ 7475022 (+) True AMCG00017491
AMCG00017488 mRNA upstream 362783 7240443 ~ 7279492 (+) True AMCG00017488
AMCG00017486 mRNA upstream 453663 7180946 ~ 7188612 (+) False AMCG00017486
AMCG00017483 mRNA upstream 796169 6844975 ~ 6846106 (+) True AMCG00017483
AMCG00017493 mRNA downstream 8123 7655383 ~ 7658125 (+) True AMCG00017493
AMCG00017495 mRNA downstream 16448 7663708 ~ 7667075 (+) True AMCG00017495
AMCG00017503 mRNA downstream 54854 7702114 ~ 7712194 (+) True AMCG00017503
AMCG00017508 mRNA downstream 159128 7806388 ~ 7813639 (+) True AMCG00017508
AMCG00017510 mRNA downstream 183738 7830998 ~ 7835213 (+) True AMCG00017510
TU113164 other upstream 457485 6804744 ~ 7184790 (+) False AMCG00017486
TU113384 other downstream 20923 7668183 ~ 7671850 (+) True G90877
TU113388 other downstream 45325 7692585 ~ 7693347 (+) True G90881
TU113473 other downstream 485108 8132368 ~ 8132854 (+) True G90955
TU113646 other downstream 1040437 8687697 ~ 8689406 (+) False AMCG00017526
TU113671 other downstream 1104453 8751713 ~ 8753781 (+) False AMCG00017527

Expression Profile