RNA id: AMCG00017497


Basic Information

Item Value
RNA id AMCG00017497
length 4661
RNA type mRNA
GC content 0.53
exon number 9
gene id AMCG00017497
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7668024 ~ 7679350 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTGATGTCCAGTGGCTCCGGGCTTTGACCCTGCACTCACCCCTCACAGGTCCGGCACCGCATTACCGGTCAGGTGATGGTGCTGAAGATGAACAAGGTGGCCAGCAACAGGGCCAACATGCTGAGGGAGGTGCAGCTGATGAACAGGCTGTCGCATCCCAACATCCTGAGgttcCTCGGAGTGTGTGTCCATGAGGGCCAGCTCCACGCCCTCACTGAGTACATTAATGGGGGCAATCTGGAGCAGCTGCTGGACAGTGATGTGTACCTGTCCTGGGCCGTGAGGGAGGGCCTGTCGCTGGACATCGCCCGGGGGCTGCAGTACCTACACGGCAAGGGCATCTTCCACAGGGACCTCACCTCCAAGaacTGTCTGGTTCGCTGTGACAGCGGCCACTTCACTGCTGTGGTGGGAGACTTCGGGCTGGCAGAGAAAATCCCTGTGTACAGTGAAGGGGTGGAGAAACAGCCCCTGTCTGTGGTGGGCTCCCCCTACTGGATGGCTCCGGAAGTCCTGAGAGGAGAGCTGTACAATGAGAAGGCGGACATCTTCGCCTTTGGGATTATCCTGTGCGAGACCATCGCACGCATCCAGGCTGACCCGGACTTCCTCCCCCGCACAGAGGATTTTGGACTGGATGTGGAATCATTCCAGCACATGGTGGGAGACTGCCCACCTTCTTTCCTGCAGCTGGCAGTCAACTGCTGTGATATGAATGCAGACCGGCGTCCCTCATTCTCAGAGATTGTTGCGGAGCTGGAGAcgagggagggagcgagggagagcGTGGGTGAGGAGATCAATCTGGCAGCGGTGAAGGATGGTATCCCTGTTGGACCCCTGTTGGCCCCTGGCTCCAGCCCTGTTCGGCGACGCTCTCTGTGCTTGCCCTGGGACCGAGGGCTGTCCCGTAGCCAGTCTGACATGCTGCCGCCTGCGATACCACCCCTGCTCTCCGGCACACCTGCCCGGGTCAACCCCTTCTCCCAGCGGCAGGACCTCAACGGCGGCAAGATCAAGCTGTTCGACACGCCCAGCAAGTCTGTCATTTCGTTGACCTTCGCCCTTCCCCAACCACCCGACTCCTGCACTGGCTCCTCCCCCACACCCCCTGACCCCTGGCGGGATTCCAGAGGGACCCCTCGTCGCTGCCGCTCGCTGCCCTGCACCCCTGAACTGCCCCGCCCTACCCGGCCCACCTTGGCCCCCTCCGAGGAGCAGGTTGCTCTGGCCCAGCACAGGCAGGGGCAGCTGAGGGTCAGTGAGCCACAGGACAGAGGCATCGATGTGGTGGCGTACAGGTTGGGCGGAGGGCAGATGCCTGACCCTGAGCGGTGGGGCGAGCCGGTCATGAGGCAGCCTGCAGGGAGGATGGAGAAGGTGGGGGAGAGTAGGGGGTCGACGCTGGACTCGGAGACACCCGTGGACCTGGAGTTGGTGTCTCTGGAGATGCTGACTGAGGGAGATCTGGAGACTCTTTGTCTGGGGGAGCCCATGGACTGCTCCAGCAGCCCGGACACCTTGGAGGGCTCGGTGTTCCTGGAGGGACCCCAACCGAACCAGTCCTGCCTCAGCCCTCCCTCGCCCTCTGTGCTGGCCAATGGCTGGAACTCTCCAGTTTCCAATGGCCCGCCCTTGCTGCCCCCGCTGTCCCCGCTCGATAACAACAACACGGCCGTGGTGGTCAGCCACcccttggggtgggggggcaacGGTTATCACGGGAACTCTGCGAGTCCCTCGTTCCCGCTGCACGGATCCAGCACAGCCACCCTGGAGCAGGACGAGGTCATTTCCTGTCCGGGCTGCTGTCTGGCGGGTCTCCGCTTCCCAACAGCTTGCTTGCGACCCCGCAGGAACCCCCCCCCCTATAAGAACCTGAATGGAGAGGCGCGGCGCAGCCTGCTCTGTGGGAACACAAAGACCCTCCCGGCCGCCCCACGCCTACCTGGGCACAGTGCCGAGCCCAGCCTGCCCCTCCCGGAGGCACAGACATAGGGAGGATGTCCTCATCCTTCGATGTGGCTCCAGTTCCTGTCAGCACTGTCTCTGTATagatatttttcatattgttaaTTATATCTGTTATTGCTGATGTTTGCTCAGGGGTGTTGAGGAGTTTGCTGCCTCCtccactcttttttttttttttcccccaggcTCTGGGCAACAATGGCAGGGGCAGTTTCTATAGTGAACAGAATGATAGACCAATATGGGGAGAAAGTGAGTGGCCAGCAGCCTGTGGGGGTGCTCTTGGGTTTGCTGGGTTATTACACCTAGAGTCTGTGAAGAGGGCCCTACTTTTCTAGCCCTATACACCCTTCTGATTGCCGGAACCACTCTCTCCTCTGTGGCTTGCTCtcaggttgttttgtttgcgTTTCTTGGAGTTGCACTGAACGAGCCTGAAGGGGAGGGTAGTGGCACTGCGGTGTGCAGTCGGTGTGAAGCGGTGGCAGTCGCCGTCTGAAAAGGAGTGGTTGGGAAGGAGGAGCTACTCGGGGTCATTCGGGAGGTTGCATTTCTCTTTGTTGCATTGCATTGCGtgctggtttgtgttttaatggaccgcgtgtgcgtgtgcgtgtgcgtgtgcgtcgcCTGCCCGGACTGAGCCCAGGGTAACATTCCACACACCTCCCCAGCACTCTGCAGTATCGACACTTGCTAGCGGTGGGGAGCTCGAGTGTTTGGTGGGATGGGAGGAGAGTGAGAGGGACGGAGAGGTTGACCTAACCGTCCCATCAGCCCCTCTCGCAGAGTTCCAGTCACAATCTGCCTCAACCTGCCTCCCATCTCTATCTCCTGGAGTCGCACATACAGAGTGGAGTACCTCCTTAGTTTCAGATCTACTGATTTACCCCTGTGACCCTGTTGCACACAGCATGAGTATTACAAACTACGGTTTAGAAGTGTGAACAGCCAGTGTGACGGGAGAGAAATTGCACGGGGGCGAAACATGATTtgttgtctctgtgttttgtacAGATCACATTGTTCTCCGCACCACACTGTCCGTGCAAACACTCCCCAGGCAGGCCGTGCTGTCTGAGAAATCCCAGCACTGCGCAGCTCTCAATCTGCACATGACGCTGTGGGGGACAATGGGGGGGTTGCTGTAGGGCggggattcattttttttctatgtacTTTACAAGAGGCAATGAATTTAAATggtatattttttcttacaagAGTTTGTATTCTACACTGACTGCTGTACAGAGTTTTTGCTTGAAACCCCCGAATTCCCTGATTTTTAGCTTATTTATTCCCCGGGGGTACTGGAGGGTCCTGGGAGAGAGAGCTGGTCTGGGGACTTCGTGTCCGCCCATGGTCTAGTTATCGGGTCAGTATTGACAACTTATTTTCCACTACAACACCCCTTTCTTTAAGAAAACTCTGAAGCCATTCCTGATTTTTGTAGAATTCCGAGGAGCCTCAGTTCAGATGCACCTCTGTGAAGATGTCTGGTTTTTCACAGCCCCGTTGTTTTTCATTCTGGACAGGAAATATCTGGTGTGAACTTGTGGTGGGATAATGTTCCATGATTCTGACCCTTAGCCTCTGAGTACCCAGGGCCCTCCTTCACCCTCACATGAAGCACTTATCATTGGAAACCATGAACAGCTTTAATAAATCGGGTCAgataaaatcttaatttaaagaataaataaaaaaaaaatatatatggatagTAAATCTTGTGTGGAGTGCTGTCATTCGAAGATGCCACAGTCTCTTACTTGCACTTTGCTCTGATTATGCAGCACATAGAGTATTTCCTACTAAAGCCAGCTTCGGCGACCTCTCGTTGCAATAGGAATCAGgctttgtaaaatgtgtaatttagtCAATGTAGTCGTAGATTCATCCACTAAAGACCTCTGGCTCAGCTGAGTGGTGCATGATCATAATAGATAGTGAATAGTTCCATCACGGTGCAAGCTTAAGGTGAGACTGATTGCAGGAAAGGGCCAGACTGGTTTCACCTGCACTCTTCTACACTCCACTTAGGATAAAGTACTGTTTGCAGGCCATTCTCCTTTCAACCTCTTCCCATTATCTAGTTCAGTGGTGTCCACGCCTATACCTGGAGAGCCACACAGTCTCCTGGTTTTCCTTGTAGTTGATGAGTGCAAGTTCTTGTGTTTTCCAAGCCTCCAATCAGATTCTAGTTCCCATTAAACCTCCAGGACTATGGCTCTCCAGGTCTAAGGCTCGAGATCTCTGCTCTATCTTCTCTCTCATGTGCCGTTCCAAAGATCTGCCTGTAAGATCCCATTCGTTCTTCAAACGAAAGTGTACGGCAAAGATGAGGTGCTCTAAACGCATCCAGCTTAACGTTCAGATCATCGTATATAAACCTCTCCATATTACTTCTGGTCAGCATGCATAAACTATAAAGCTGCTTCTTTAATAAGTGAAAGTTTattgattgaaaatgtatgaatgattaaaaacaaatttcaaaagcaaaccaaaaacaaataaacatgcaacCGTCTGACCTGATTCTTGAGTTATTCAAACATGCATAAACCTGGGGTacaataagtgtttttttatggttGAGATTGATCTACTGGAGGACTTCTGCCTTGGAATTGCTCTTCATATCTGATTCGACAATTGCAAAAATGTTCTCCATTTGCA

Function

GO: NA

KEGG:

id description
K08841 TESK1; testis-specific kinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113310 lncRNA downstream 343917 7323730 ~ 7324107 (-) True G90817
TU113297 lncRNA downstream 385547 7266067 ~ 7282477 (-) True G90805
TU113285 lncRNA downstream 441181 7221828 ~ 7226843 (-) True G90796
TU113271 lncRNA downstream 462163 7205620 ~ 7205861 (-) True G90783
TU113246 lncRNA downstream 543850 7065885 ~ 7124174 (-) True G90762
TU113392 lncRNA upstream 14233 7693583 ~ 7694005 (-) True G90885
TU113416 lncRNA upstream 93868 7773218 ~ 7784195 (-) True G90908
TU113454 lncRNA upstream 149148 7828498 ~ 7830609 (-) True G90938
TU113465 lncRNA upstream 335045 8014395 ~ 8023105 (-) True G90948
TU113474 lncRNA upstream 453045 8132395 ~ 8132854 (-) True G90956
AMCG00017502 mRNA downstream 6191 7660846 ~ 7661833 (-) True AMCG00017502
AMCG00017501 mRNA downstream 7362 7658067 ~ 7660662 (-) True AMCG00017501
AMCG00017498 mRNA downstream 17916 7647646 ~ 7650108 (-) True AMCG00017498
AMCG00017500 mRNA downstream 28764 7625571 ~ 7639260 (-) True AMCG00017500
AMCG00017499 mRNA downstream 73942 7587951 ~ 7594082 (-) True AMCG00017499
AMCG00017504 mRNA upstream 76307 7755657 ~ 7776355 (-) True AMCG00017504
AMCG00017505 mRNA upstream 101702 7781052 ~ 7793599 (-) True AMCG00017505
AMCG00017507 mRNA upstream 164296 7843646 ~ 7851221 (-) True AMCG00017507
AMCG00017506 mRNA upstream 310443 7989793 ~ 7991440 (-) True AMCG00017506
AMCG00017513 mRNA upstream 344306 8023656 ~ 8042454 (-) True AMCG00017513
TU113233 other downstream 554843 7112436 ~ 7113181 (-) True G90749
TU113210 other downstream 753234 6888722 ~ 6914790 (-) False G90746
TU113104 other downstream 1278986 6387252 ~ 6389038 (-) True G90715
TU112836 other downstream 2444977 5222473 ~ 5223047 (-) True G90502
TU112835 other downstream 2447003 5158384 ~ 5221021 (-) True G90501
TU113453 other upstream 151535 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 312787 7992137 ~ 7996595 (-) True G90939
TU113572 other upstream 817145 8496495 ~ 8514955 (-) True AMCG00017520
TU113686 other upstream 1075938 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 2681950 10361300 ~ 10497104 (-) True AMCG00017556

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00065921 True 3281 mRNA 0.45 10 NC_007118.7 24528866 ~ 24572034 (+)
grasscarp (Ctenopharyngodon idella) CI01000049_06880930_06892990.mRNA True 2571 mRNA 0.48 12 CI01000049 6880664 ~ 6893438 (-)