RNA id: AMCG00017498


Basic Information

Item Value
RNA id AMCG00017498
length 820
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00017498
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7647646 ~ 7650108 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACACACTGCGGCGAGAGAGATGGATGCTCTTTCAGGACACCCAACCTTTCCACTCCtcctctgtgctgtactgtggaCTGGCAGCCTGGCTGCCCCCACACACTGCTACTACAACTCCAAAGGACCgatctccctccatctctccctcagCGCTGTGTGAGCACGAGGGCCGGCAGTACTCTCTCGGCGAGTCGTGGACAGACAGAGGGTGTCTCCTGTGCACCTGCCTGCACCCTGTCGGGGTGGGCTGCTGCGATATtgtccaGCGGCCAGTGGACTTCCCCGCTTGGTGTGAGGTGCGTGTGGAGCCAGGGAGCTGCCAGGTGACTGTGGTCCAGAGCGCCGACCCACGCCTGCCCTGCCTGCCCGGAGGGGGCGAATGGAGCCCCAACCAAGGGACGCTGTACAATGGGCTGGGGGGCTAGCCTCCACCATTCCCTCTATTCCTCTCTGCTACTCTGTCCGTTTCCCTTTATCAGTGGTATGCAGCCTTGACTTCTGCATTCCACTCAACTGCATGTCTTTCATAACACGCTCGATTCAGTAATCGCAGACTCCGTCGTGACAGTCCTGCAGTGCAGACTGTCTAGGGACGACGCCAGTTCCTTTTATTTCAGATTGACAATGTCCAGACTACAAGCATACCAATATTCTTGCACAGTGTCGGTTATAATTTTGCTGAGTAACATATTATATTAGACTGAACTATACAGTCATGTAAGCTGgtgtatttgtataattgtattctaCTCCAAGCACATGCATCTTTCTGTTATCTCAATATgacattttgaagaaataaaatctgatgAATAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113310 lncRNA downstream 323539 7323730 ~ 7324107 (-) True G90817
TU113297 lncRNA downstream 365169 7266067 ~ 7282477 (-) True G90805
TU113285 lncRNA downstream 420803 7221828 ~ 7226843 (-) True G90796
TU113271 lncRNA downstream 441785 7205620 ~ 7205861 (-) True G90783
TU113246 lncRNA downstream 523472 7065885 ~ 7124174 (-) True G90762
TU113391 lncRNA upstream 18072 7668180 ~ 7670591 (-) False AMCG00017497
TU113392 lncRNA upstream 43475 7693583 ~ 7694005 (-) True G90885
TU113416 lncRNA upstream 123110 7773218 ~ 7784195 (-) True G90908
TU113454 lncRNA upstream 178390 7828498 ~ 7830609 (-) True G90938
TU113465 lncRNA upstream 364287 8014395 ~ 8023105 (-) True G90948
AMCG00017500 mRNA downstream 8386 7625571 ~ 7639260 (-) True AMCG00017500
AMCG00017499 mRNA downstream 53564 7587951 ~ 7594082 (-) True AMCG00017499
AMCG00017492 mRNA downstream 155859 7489082 ~ 7491787 (-) True AMCG00017492
AMCG00017490 mRNA downstream 194073 7451642 ~ 7453573 (-) True AMCG00017490
AMCG00017489 mRNA downstream 347701 7292856 ~ 7299945 (-) True AMCG00017489
AMCG00017501 mRNA upstream 7959 7658067 ~ 7660662 (-) True AMCG00017501
AMCG00017502 mRNA upstream 10738 7660846 ~ 7661833 (-) True AMCG00017502
AMCG00017497 mRNA upstream 17916 7668024 ~ 7679350 (-) True AMCG00017497
AMCG00017504 mRNA upstream 105549 7755657 ~ 7776355 (-) True AMCG00017504
AMCG00017505 mRNA upstream 130944 7781052 ~ 7793599 (-) True AMCG00017505
TU113233 other downstream 534465 7112436 ~ 7113181 (-) True G90749
TU113210 other downstream 732856 6888722 ~ 6914790 (-) False G90746
TU113104 other downstream 1258608 6387252 ~ 6389038 (-) True G90715
TU112836 other downstream 2424599 5222473 ~ 5223047 (-) True G90502
TU112835 other downstream 2426625 5158384 ~ 5221021 (-) True G90501
TU113453 other upstream 180777 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 342029 7992137 ~ 7996595 (-) True G90939
TU113572 other upstream 846387 8496495 ~ 8514955 (-) True AMCG00017520
TU113686 other upstream 1105180 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 2711192 10361300 ~ 10497104 (-) True AMCG00017556

Expression Profile