RNA id: AMCG00017500


Basic Information

Item Value
RNA id AMCG00017500
length 2727
RNA type mRNA
GC content 0.59
exon number 17
gene id AMCG00017500
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7625571 ~ 7639260 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGCGGGGGACGAGGACTCCACGGCGGCGCTGATGAGCAGGTACCTGTCGGCGGCCCCGGGGAAGGGGGTGCCGGAGGAGGGCTGGCGGATCTGCCTGGCACACGAGTTCAAGGAGAAGAGGAAGCCCTTCCAGGCTCGGGACGTGTCGCTGGCCAACATGGTGGAGCATGTGGGGCTGGGAGTCAGGTATCTGAAGTGGTGGTACAGGAAGACTCGAGTGGAGAAGAAGGCTCCCTTCATAGACATGTTCCACGCCTTGCCCCTCAGACAGATATACGGTGTTCCTATGGGTGGGTTTGGAGGAGGTACTATCACACGGGGCTGGCGGGGGGAGTTCTGCAGATGGCAGCTTAACCCTGGAATGTACCACTACAAAACTGTCATTGCCAACCAGtttacAGTCTGTCTGCGTCGGGGGGGTCAGACCGTGTACCAGCAAGTGCTGTCAGTGGAGCGCCCCCCCACGCTGCAGGGCTGGAATTGGGGATACTGTGGCAGCTACGCCTTCTATCACGCCCTGTACCCCCGCGCCTGGACGGTCTACGACCTGCCGGGACAGAATGACTGTAGTCTCCCAGCAGCAGTCTTGGTGTGGGAAATTGAGAACAGGAATGACTTTGCCCTGGATGTCTCCATTATGTTCACCATGATCAATGGGTCCGGCCACAAGGATGACAAGAAGGGTGGCCACTGGAACGAGCCATTCCGTCTGGAGAAGGATGGCGAGGCGGTGTCTGGGGTCCTGCTGCACCACTGTACTGCCATCAACCCCTACACCCTGGCCATCGCAGCACGGGAACAGCCTGGCAGAGACATCAGTCACCAGACAGCTTTCAGTCCTCGGGGAACATGCCGTGGGCTGTGGGACGACCTCATCACAGATGGGCGACTGGATTCCCCCACAGGCCCTAGTCCCCCAACTCAGAAAGGAGAGAATGTGGGAGCAGCCCTAGCGGCTCGGTGTACAGTGGCTGCAATGGGACAAAACACTCTGGAGTTCAGTCTTGCCTGGGACATGCCCAAGATGACCTTCGGCTCTGGGGAAAAAGAGCATCTCAGGAGGTACACGCGTTTTTTTGGTAGCAGGGGAGACGCAGGGCAGGCGCTCAGTGTACATGCTCTCACGCAGTACCGGGACTGGGAGAGACGCATCAAAGACTGGCAGAGACCCATCCTACAGGACAGGGCCCTGCCTGGCTGGTATAAATCCGCTCTGTTCAATGAGCTGTATTTCCTGGCAGATGGGGGCACGGTGTGGGTGGAGCTGCCCCCAGACTGCGACATCACTGGGGGGCTCCACAGTGAGCAGGGGGGGCTGCCAGCACAGCCGCCCATCCTCAAAGAATACGGCCGCTTCGCCTACTTGGAAGGTCAGGAGTACCGGATGTACAACACCTATGACGTTCACTTCTATGCCTCCTTTGCCCTCATCATGCTGTGGCCTAAGCTGGCCCTCAGTCTGCAGTACGACATGGCTGGCTGTGTGGTGAGGGAGGACTGCACTCAGAGGCTGCACTTGATGAGCGGTCTCGTCTCCCCAGCCAAGACCAGGAACGTCGTACCACACGACATTGGAGACCCAGACGACGAGCCGTGGCAGAGAGTCAACGCCTACCTGATTCACGACACCGCCGACTGGAAGGACCTCAACCTGAAGTTCGTGCTGCACGTGTACAGAGACTTCTACCTCACCGCAGATCGGCAGTACCTCCACGACATGTGGCCCATCTGTCAAGCTGTGATGGAGTCTGAACTGAAGTTCGACAAAGACGGTGACGGCCTCATCGAAAACTCTGGCTACGCTGACCAGACCTACGACGGCTGGGTTGTCAGTGGAGCCAGtgCGTACTGTGGGGGCCTGTGGATAGCGGCGGTGTGTGTGATGTGCAAGATGGCCAGGCTGCTGGACTGTGAGTCGGTCTATCAGCGCTACAGAGACCTGCTGGAGAGGGGCAGTGCTGCCTTCGACAAGCTGCTGTGGAATGGTCAGTATTACAACTACGACAGCAGCGGCCGACCTTTTTCCAACAGCATTATGTCGGACCAGTGTGCTGGGCAGTGGTTCCTCCGGGCGTCTGGACTGGGTGAAGGGGACTTCCAGGCATTCCCGACAGAGAAGGTGCGGCAGGCCCTCCGCACAGTGTTTGATCTGAATGTGATGCAGTTTGCTGGGGGAAAGATGGGCGCTGTGAATGGGATGCGGCCGGAGGGTGTGCCGGACTGCTCCAGTGTTCAGTCGGACGAGGTGTGGGTCGGAGTGGTGTACGGCCTGGCTGCCACTATGATCCATGAGGGGATGGTGGAGGAGGGTATGCGGGCAGCGGAGGGGTGTTACCGCACCGTGTGGGAGCGACTCGGCATGGCGTTCCAAACCCCCGAGGCCTACTGCGAGAGGGGCATCTTCCGCTCGCTCGCCTACATGCGCCCGCTCAGTATCTGGGCCATGCAGCTGGCACTGGAGCGCAGGGCGGCCCAGCCCGAGGGATCGGAGGCCGCGGAGACTGTCCCACAGTCCACGCACACGGTTTCCAGCACGGAGACTGTAGAGACCAGACTGAACACAGGGACTGACTCCAACACTGTCCCACCAAAAGAGACTGAGCCAGAGACTCGAAACGGTGTCCCCCACACAGATGCCGTACCCCCTAACTCTTCTGTCCAGTCTAGTGACCAGGATCTAGTGTCCAGCAAAGAGGGGGACAGCTGCACCTCTGCACAGTGA

Function

GO: NA

KEGG:

id description
K17108 GBA2; non-lysosomal glucosylceramidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113310 lncRNA downstream 301464 7323730 ~ 7324107 (-) True G90817
TU113297 lncRNA downstream 343094 7266067 ~ 7282477 (-) True G90805
TU113285 lncRNA downstream 398728 7221828 ~ 7226843 (-) True G90796
TU113271 lncRNA downstream 419710 7205620 ~ 7205861 (-) True G90783
TU113246 lncRNA downstream 501397 7065885 ~ 7124174 (-) True G90762
TU113391 lncRNA upstream 28920 7668180 ~ 7670591 (-) False AMCG00017497
TU113392 lncRNA upstream 54323 7693583 ~ 7694005 (-) True G90885
TU113416 lncRNA upstream 133958 7773218 ~ 7784195 (-) True G90908
TU113454 lncRNA upstream 189238 7828498 ~ 7830609 (-) True G90938
TU113465 lncRNA upstream 375135 8014395 ~ 8023105 (-) True G90948
AMCG00017499 mRNA downstream 31489 7587951 ~ 7594082 (-) True AMCG00017499
AMCG00017492 mRNA downstream 133784 7489082 ~ 7491787 (-) True AMCG00017492
AMCG00017490 mRNA downstream 171998 7451642 ~ 7453573 (-) True AMCG00017490
AMCG00017489 mRNA downstream 325626 7292856 ~ 7299945 (-) True AMCG00017489
AMCG00017487 mRNA downstream 403826 7210358 ~ 7221745 (-) True AMCG00017487
AMCG00017498 mRNA upstream 8386 7647646 ~ 7650108 (-) True AMCG00017498
AMCG00017501 mRNA upstream 18807 7658067 ~ 7660662 (-) True AMCG00017501
AMCG00017502 mRNA upstream 21586 7660846 ~ 7661833 (-) True AMCG00017502
AMCG00017497 mRNA upstream 28764 7668024 ~ 7679350 (-) True AMCG00017497
AMCG00017504 mRNA upstream 116397 7755657 ~ 7776355 (-) True AMCG00017504
TU113233 other downstream 512390 7112436 ~ 7113181 (-) True G90749
TU113210 other downstream 710781 6888722 ~ 6914790 (-) False G90746
TU113104 other downstream 1236533 6387252 ~ 6389038 (-) True G90715
TU112836 other downstream 2402524 5222473 ~ 5223047 (-) True G90502
TU112835 other downstream 2404550 5158384 ~ 5221021 (-) True G90501
TU113453 other upstream 191625 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 352877 7992137 ~ 7996595 (-) True G90939
TU113572 other upstream 857235 8496495 ~ 8514955 (-) True AMCG00017520
TU113686 other upstream 1116028 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 2722040 10361300 ~ 10497104 (-) True AMCG00017556

Expression Profile