RNA id: AMCG00017506


Basic Information

Item Value
RNA id AMCG00017506
length 981
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00017506
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7989793 ~ 7991440 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCATTCTCACCAGGGCTTGCGTCCTTTTCGCGGCAGGCATGGGACAAAGTGCTGTCAAAGGTAAAGAAAGCGGTTGTTTTCATGGACGATAAGTGCTCGGAGAGTCTGCACTGGAGTGGGGGAGCCTCAGTGTTATTAGAGGCTGGGGCCACCAATATTAAACAGTTTTCCAGCTTCGAAGCCGGCAGTGCAAATGAGCCCAAAGCAGTTTTCATTGTGAGCACGCTGTTAAAGGGCAGGACAGCGGACATCATTAAAGACATCATTGGCCTCAGCTCTTTCCAGTACTGCGTTGTGTTCACTGCCGTCACCCACACTCTCCATCTCCTGGCTAACAATGTCAGCGCAGAGATGGAGGGCAACCCGGTGTTTGAGCAGTTCAAGGACAAGCTGTGCGAGTGGATGGGGAACATGAATTACACGGCGGAGGTGATGCATGCCCCACTGCTGTTCGCTCCTGTGTCGTCTGACCTGTTCGTTTCGCCGGCCTTTGGGGAGTTATTCCCCCTACTCTCTCAGGATCTCGATAAGATAAACAGAGGTCGTCCGGACAAGAAGAAGTTTGGAGGTCTGTCTGACGTGGACATGCACTCCCTGCCACCCGAACTGCAGATCCAAATCAGGGCTTTGGCTTCTGGGCTCAGCGCGGTGTTTGACCTCCTCAACACCAGGGAAGAGTGCTTCGCTGTCGGGCCTACGAGTCGCATTATAGCAGGAGAACTGGCAAATCACCCCCATGCGAAGATCAGGAGAAAGACTGCACCCAACAAAGCATCTGTAGTGTTCATTGACAGGACCCTTGATTTGACTGGAGCTGTTGGCCACCATGGTGATAGTCTGGTGGAGAAGATCCTGTCAGCTCTGCCGCAGCTTCCAGGACATCAGAGTGATGTGCTTGTGGACATGCTGGAGCTCACTGCCCTGCAGAGGACTGAGGACGCCAATGGCATTATCGCCCCAGGATGTTTGGCACAACCA

Function

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113454 lncRNA downstream 159184 7828498 ~ 7830609 (-) True G90938
TU113416 lncRNA downstream 205598 7773218 ~ 7784195 (-) True G90908
TU113392 lncRNA downstream 295788 7693583 ~ 7694005 (-) True G90885
TU113391 lncRNA downstream 319202 7668180 ~ 7670591 (-) False AMCG00017497
TU113310 lncRNA downstream 665686 7323730 ~ 7324107 (-) True G90817
TU113465 lncRNA upstream 22955 8014395 ~ 8023105 (-) True G90948
TU113474 lncRNA upstream 140955 8132395 ~ 8132854 (-) True G90956
TU113484 lncRNA upstream 170095 8161535 ~ 8162113 (-) True G90964
TU113485 lncRNA upstream 173214 8164654 ~ 8164905 (-) True G90965
TU113512 lncRNA upstream 237875 8229315 ~ 8229561 (-) True G90992
AMCG00017507 mRNA downstream 138572 7843646 ~ 7851221 (-) True AMCG00017507
AMCG00017505 mRNA downstream 196194 7781052 ~ 7793599 (-) True AMCG00017505
AMCG00017504 mRNA downstream 213438 7755657 ~ 7776355 (-) True AMCG00017504
AMCG00017497 mRNA downstream 310443 7668024 ~ 7679350 (-) True AMCG00017497
AMCG00017502 mRNA downstream 327960 7660846 ~ 7661833 (-) True AMCG00017502
AMCG00017513 mRNA upstream 32216 8023656 ~ 8042454 (-) True AMCG00017513
AMCG00017512 mRNA upstream 151000 8142440 ~ 8161444 (-) True AMCG00017512
AMCG00017516 mRNA upstream 337707 8329147 ~ 8349988 (-) True AMCG00017516
AMCG00017519 mRNA upstream 395622 8387062 ~ 8416479 (-) True AMCG00017519
AMCG00017520 mRNA upstream 482050 8473490 ~ 8514803 (-) False AMCG00017520
TU113453 other downstream 157201 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 876612 7112436 ~ 7113181 (-) True G90749
TU113210 other downstream 1075003 6888722 ~ 6914790 (-) False G90746
TU113104 other downstream 1600755 6387252 ~ 6389038 (-) True G90715
TU112836 other downstream 2766746 5222473 ~ 5223047 (-) True G90502
TU113456 other upstream 697 7992137 ~ 7996595 (-) True G90939
TU113572 other upstream 505055 8496495 ~ 8514955 (-) True AMCG00017520
TU113686 other upstream 763848 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 2369860 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 6441718 14433158 ~ 14479787 (-) True AMCG00017631

Expression Profile