RNA id: AMCG00017516



Basic Information


Item Value
RNA id AMCG00017516
length 5411
RNA type mRNA
GC content 0.45
exon number 30
gene id AMCG00017516
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8329147 ~ 8349988 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCCGTGCATCACTGACTCCAAGGGACTGCAAGTGAGAGGCGCATTTGAACGGATGCACAACGCCTTTTTTCCTCATAACGACAAACAATACTATATCAAGTCAGTATCATTTGCTAAACCACCAATTTAACGTGATCTACGGGAATCCAAGGATATACATTGTTGGAAGGAGAGCTGATTCATCATTTGTGGGGATGTACGCTTAAGGAGAGCTGATTTACAAGAAGGAAATAATTACACCTTGATGCTGGGAAGTCAGTGCTCTTGTGCTCGAAGATGACCAGGGCATGGGTTTTTATTTGCTGCATGGGGGTTGTTTTTGGAGCAAATGTTGTGACAGgtaTAGTCTTGAGGTATATGCCTGATCCACCAAAACTTAGTATTACAGATCAggtacacaaaataaatgcttcagaGACATTGGAAATAACATGCAGGGGACAGCAACAATTAGGATGGACATGGCCTCGCAACCAGAGCGGGCCAGAACAGACCCTGACAGTGACTGACTGCAGTGGCTCTGGTCTTTTTTGTAAGACCCTCATCCTTACAAAGGCAACAGCCAACAACACTGGAGAATACAGGTGTTCCTATAAGGATCTGAAAGCCGAAGATGGAAAAACATCAGCCAGCGTCTATGTCTTTGTCCAAGACTACAGAGCACCATTTGTCAGCTCTTCCTCtaattttgaaattgtgttCATACCGGAGAGTATTCCTGTGGTTATTCCCTGCTTAGGATCAATAGAGCATCTCAATGTCACACTGTATGCGAACTATCCCAAAAAAGAGTTTAATCCTGATGGGAAGACCATTTACTGGGACAGCCGGAGAGGGTTCATTATCCCCAGCCAGTATATCAGTTATGCAGGAGTTGTTTTTTGCCAAACAGTTATAGAAAATGATACATACCAGTCTTCTATGTTCATAGTTGCAGTTGTAGGATACAGAATTCATAAGCTCTCTCTGACCCCTCAACATGAAGTGAAACTGGCAGTGGGAGAAAGGTTTTCACTAAACTGCACTGCTACCACAGAGCATAACGTGGGGATTGATTTTCAGTGGAAGTACCCGGCTTGGAAAGAAAACCGGACAGAGATAAAGCCCCATAAGAATAAATTTGTCGATTACCTAGAACTTTCAAGCACCttgattattgaaaatgtaaaactaaatgATAATGGCGAGTATATATGCACAGCATCCAGTGGACGAATGGAAAAGACTGGCAGTGTGATTCTAACTGTCTATGAAAAACCATTCATTGCCATCGATGAAAGATCTGATTCTGTGGTTGAGGCGGAGGTAGGAGATCGACTTGCCAGGCTTTCTGTTAAATTCCACGCATATCCTCAACCAGAAGTGAAATgGTATAAGAATGGACTGCCAATTTCCAGGGATGAACCTCGATACAGGAGTAAAGGTGGTAACACCCTGAATATCCATGATGTATCTGAGAGGGATGCGGCCAATTACACTGTTGTGCTGAGAAATCCAATGACAAGAGAGGAGCAACGACATACGTTCCAGCTGCTTGTTAATGTTCCCCCACAGATTTATGAGAAGGAGGTGGCTCGCGATAGTGATATCTACATATATGGTAGCAGCCCAGAACTGCGGTGCACAGCTCGCGGGATCCCATCTCCAGTCGACATTCAGTGGCAGTGGATGCTAGTGGAGGACTGTCCTGGCTACTACCACCGAGAAGATTATCAGTCACCTTTCCAGTTTCATGAATGTCAGAAGTGGAGAAACATCACAGACAACACAGGCAAGAATCCCATTGACAGGATTGTGACCCAGCCTGACACTGATGTAGTGACCAAGACTGTGAGCACACTTAAGATTCGGACAGCACATGTTCCTGCTATGTACAGATGTTTGGCATCTAATAAAGTTGGTCAAGATGAGAGACTGATCTTCTTTCATGTCACACGAGGTCTGGAACTCAATGTGCTGCCTACTGCTGAGCCCATAGAAAGGGACAATGTAGTTCTACAATGCAAGGCAGACAGACTAATCTATGGAAACCTAAAGTGGTTCAGGCTGGGAAAGAGCCCCCTTAACACAGGAACCACTGTGCAACCTTGCAAACACTTCAACTTGGCCGAGGAGTCCCTGTGCCAGGCCACTCTCTCTGAGCCGAGAGGCACAAACGTCACTCTGGAGTTGAGCTTGCACAACATGTCCCACAAAGATCAGGGACCATACGTGTGCCAGGTGGAGAACATCAAAACGAAGGAGAAGACCTGCCTCTTTAAGCAGCTCTCTCTGAAAGCTCTTCAGGTACCCAGAATATTAAAAAACCTCACTGGCCAAATTATCCAAATCAGTGAAACTATCGAACTAGCCTGCAACGTGAGTGGAACCCCCACCCCTAATGTGACCTGgatcaaaaacaacaagacgCTAATGGAGGACTCTGGTATTGTTTTCACACAGCAGAACAGGACTCTGACCATCCAGCGTGTGAAGAAGGAAGACAGTGGCATCTACACCTGTCTGGCCTGCAATGACCAGGGCTGTGACTCTACACAtgcctctctctcagtggaAGGGGCAGTTGAGAAGACCAATGTGGAGCTCATTGTCCCTATTGGCTCCGTGGTGGTTGCTATGTTCTTCTGGTTACTTCTCGTCTTCGTCATCCGAACCAGAAAGAGGCCGAGTGGAGGGGAACTAAAGACAGGCTACCTTTCAATCATTGTTGATTCCGACGAACTGCCCATGGATGAGAAGTGTGAGCGGCTGACTTACGATGCCAGCAAGTGGGAATTCCCTCGAGACAGGCTTAAACTAGGGCAGCCCCTGGGCCGTGGAGCCTTTGGCCAAGTAGTGGAGGCTGCTGCCTTCGGTATTGAAAAAGCAGCCACTTGCACAACAGTCGCTGTGAAGATGCTCAAAGAGGGAGCAACGTCCAGCGAATACAGGGCGTTGCTGTCAGAGCTGAAGATTCTCATTCATATTGGACATCACCTCAATGTGGTGAACTTGCTGGGGGCTTGCACCAAACCTGGAGGTCCTTTGATGGTTATTGTGGAATACTGCAAGTATGGGAACCTCTCCAGCTACTTAAAAAGCAAAAGAGGGGAGTACAGCCCTTACAAGAGAAAGGCCTTGAAATCAAAGAAGACCAGAAGCCAGATCTTGACTGGGCTGGGATATGAGAACCAGCACATTATCGATGCCACCAGGAGGGAGAGCCCTGTCAGTTCTGGCTTTGTTGAAGACAGATCTCTAAATGACCTGGATGAGGATGAAGCAACAGAAAACCCTGACCAGACCCTACTAACAATGGAGGACCTTATAAGTTACAGTTTCCAGGTAGCTAAGGGAATGGAGTTCTTGTCTTCTCGCAAGTGTATCCACAGGGACCTCGCTGCTCGCAATATCCTTTTGTCAGAAAACAATGTGGTCAAAATCTGTGATTTTGGACTGGCACGGGATGTCTACAAAGACCCTGACTACGTTCGGAAAGGAGATGCTCGGCTCCCTCTGAAGTGGATGGCCCCAGAAACCATTTTTGACCGTGTTTACACAACACAAAGTGATGTCTGGTCGTTCGGGGTTCTGCTCTGGGAAATCTTCTCATTAGGAGCATCCCCTTACCCCGGAGTGGGCATTGATGAGTTTTTCTGTAGAAGATTAAAGGAAGGGACAAGAATGAGGGCACCTGATTACGCCACCcctgaaatATATCAAACCATGCTGGACTGCTGGCTTGACAAACCCAAGGAAAGACCCACGTTCACAGAATTAGTAGCACATTTAGGAAACTTGCTTCAAGAAAGTGCCGAACAGGACGGAAAAGACTATATCCCTCTCACGTCAGTCCACTTAGAGGAGGATTCCGGTCTCTCGCTGCCCACGTCACCTGTTTCCTGTACAGCGGAGGACGAGTACAGCGATCCCAAATTCCACTATGACAATGCTCCCGGGTTCAGGTTTGCACAGCAGAGTAGCAGGACAAGTCGGCCAGTGAGTGTGAAAACGTTTGAGGACGTGCCCATCGAACACAGTGTTGTAACTGACAATCAGACAGACAGTGGAATGATCCTTTCATCAGAGGAATTTAAAAATTTGGATACTCAGCCTACTCAAACACCGCCTTTTAGTCCCATGGCTCACCGCAAAAGCAAGGAGTCCGTGGCTTCTGAATCATCCAACCAGACCAGTGGCTATCAATCAGGATATCACTCTGATGACACCGACACCCCCCTGTACGCCAATGAGGAAATGGAGCTGTTGCAAAAGCAGGAAGTTCCTCAGACCTGCTGTAAGATGTCGGCACAGTACAGCCCTATCGTGCGCTACAGTGCGCCACCTGTGTAGCAGGACATTGGACTCGCCGGGGGTTCAACACACAAAGGACGCTGACACGGGCGGTCCCAGCCAAAGAGATCTGCTACTGTTGGGTGTCTATTCACTGTGTCTCCACATGAGCCCATTCCTGTCTTCCACATCTGGACACATATTGTGAAGGACAAGATGATTGAGGAGAATTGAACTGCAGTTGTACACCTCATGGACACAATCCTGTGGATTATCAACCCTACACAACAGCAGGGCCCTGTCCACCTTCAGTATGTGATGATAAATGTGCGATTCGGATGCCTGCATCATGGAATCtgctataaaaaacaatatcttACTACTTTGATACGTAAAGCTTTTTGTTCTCTACCTGTATCTTTCTCTAAGAAACTTTACAGTAGGCAACactgtaattgttattttattttatttggggtgtgtgtgtaggggggtaTTTTTTCTATAGAAATGCAGTTTTCATAGATTTTAATAAGTCATTTTCAGATAAAGTGCTTAAAACTGTTTGGCACGTATTTATagcaatatgtttttgtttgttgttttacaaatgtaatatatggAAGGAAAATTATATGCAGcgttgttttataaatgtacaattttcCAAGTGCCTGTAAATGAAATaaggtttgttttcacagtttacAAAAAGCGGATGTATTAAAGGGCCGAAATGATTAAAGAGACATGTCTGACGTATAAGACACGAAGCGgatgggaaatgtttttttatgtatttttgaatgtaaAGTCAGATTTTGCCAATGGTGGTTTAAATGAAGTATAATCTTAcaattatgttgtatttgtaaaaaaatttaacagtgttattattatgcaaaaaGTCCCTTAACACAACCCAGATTTGCATAGTTTTCTCGGAGTACTTCATTTATATTgaacagaactttttttttacatgaactgtaataaataaaattagttttataaaataaatttacTTGCTTATTTtgtcaacattttaaacacacgATTTCACTTTGCTATCtacaaaacaacataattatGGGTGCGTAACATAACGGTCTTATAACATGTACTTGTAGAGcagtaat

Function


GO: NA

KEGG:

id description
K05098 KDR, VEGFR2, CD309; kinase insert domain protein receptor

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU113525 lncRNA downstream 42030 8286889 ~ 8287117 (-) True G91005
TU113512 lncRNA downstream 99586 8229315 ~ 8229561 (-) True G90992
TU113485 lncRNA downstream 164242 8164654 ~ 8164905 (-) True G90965
TU113484 lncRNA downstream 167034 8161535 ~ 8162113 (-) True G90964
TU113474 lncRNA downstream 196293 8132395 ~ 8132854 (-) True G90956
TU113611 lncRNA upstream 253633 8603621 ~ 8605626 (-) True G91064
TU113678 lncRNA upstream 382772 8732760 ~ 8735232 (-) False AMCG00017531
TU113900 lncRNA upstream 1244942 9594930 ~ 9595162 (-) True G91294
TU113903 lncRNA upstream 1282657 9632645 ~ 9632859 (-) True G91297
TU113904 lncRNA upstream 1312576 9662564 ~ 9662788 (-) True G91298
AMCG00017512 mRNA downstream 167703 8142440 ~ 8161444 (-) True AMCG00017512
AMCG00017513 mRNA downstream 286693 8023656 ~ 8042454 (-) True AMCG00017513
AMCG00017506 mRNA downstream 337707 7989793 ~ 7991440 (-) True AMCG00017506
AMCG00017507 mRNA downstream 477926 7843646 ~ 7851221 (-) True AMCG00017507
AMCG00017505 mRNA downstream 535548 7781052 ~ 7793599 (-) True AMCG00017505
AMCG00017519 mRNA upstream 37074 8387062 ~ 8416479 (-) True AMCG00017519
AMCG00017520 mRNA upstream 123502 8473490 ~ 8514803 (-) False AMCG00017520
AMCG00017524 mRNA upstream 257071 8607059 ~ 8627186 (-) True AMCG00017524
AMCG00017529 mRNA upstream 313662 8663650 ~ 8677813 (-) True AMCG00017529
AMCG00017530 mRNA upstream 329825 8679813 ~ 8694359 (-) True AMCG00017530
TU113456 other downstream 332552 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 496555 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 1215966 7112436 ~ 7113181 (-) True G90749
TU113210 other downstream 1414357 6888722 ~ 6914790 (-) False G90746
TU113104 other downstream 1940109 6387252 ~ 6389038 (-) True G90715
TU113572 other upstream 146507 8496495 ~ 8514955 (-) True AMCG00017520
TU113686 other upstream 405300 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 2011312 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 6083170 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 7516959 15866947 ~ 15867647 (-) True G92124

Expression Profile


AMCG00017516 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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AMCG00017516 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00017516 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.