RNA id: AMCG00017519


Basic Information

Item Value
RNA id AMCG00017519
length 2934
RNA type mRNA
GC content 0.46
exon number 20
gene id AMCG00017519
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8387062 ~ 8416479 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATTTTTGTAATCCTTTCCTGTTTTGTAGACTTGAGAGAAGAAAACATAACTGGAAGTCACCCACTGAAGATCCTGCAGAAACGCACTGCTGTTTAACCATTATCCTCTgagctttttttaaaaaaatttttTTGGTCATGTGGTGTTTGCACATCCGAACACGTCGAAAATGGCAGCTTCCTGAAGACCTAAGATCTCTTATATCTTGCTGATATAAAATCTTCTTACCACATCAGTTTTTTAATATAGGTTGGGACTTTGCAGCATCTGGCctggtttccttttttccccaccaaCAGTACTTCACATTACAGACAATCTGTATTGGAGgtACAGTTACAAATGTCTACCTCACGATTAAAGTGTGATTTACTACAACTGCTACCCTGAACAAGTTagaaaatgacctccagcgtaGACCGGGATGACAGTAGCATTTTTGATGGATTAATGGAAGAAGATGACAAAGATAAAGCTAAAAGGGTTTCCAGGAACAAATCTGAGAAGAAACGCAGAGATCAGTTCAATGTCCTCATCAAAGAGCTGGGCTCCATGCTCCCGGGGAATACCCGGAAGATGGACAAATCCACAATCCTGCAGAAAAGCATCGATTTCCTGCGCAAGCACAAAGAAATTGCAGCACAGTCAGAGTCGAGTGAAATCCGACAAGACTGGAAGCCTCCATTCCTCAGTAATGAGGAGTTTACACAATTAATGCTAGAGGCGCTAGATGGCTTCTTCCTAGCAATAATGACAGATGgaaatataatatatgtttCAGAGAGTGTTACTTCCTTACTTGAACATTTACCTtcgGATCTTCTGGATCAGAATCTGTTAAATTTCCTCCCATTGGGGGAGCATTCAGAGGTGTATAAAGTTCTTTCTAGCCAGATGCTGGAAGGAGAGACTCTGACTCCAGAGTATTTAAAGAcaaaaaACCAGTTAGAATTCTGTTGCCATATGCTACGAGGAACAATAGATCCCAAGGAACCCCCTGTTTATGAGTATGTGAAATTCATAGGAAATTTCAAGTCTTTGAATAATGtgcCTACGTCCACACGAAATGGCTTTGAAGGAGTTATACAAAGGTCATTAAGGCCTTCATATGAAGAAAGAGTCTGCTTCATAGCAACTGTAAGGTTAGCTAAACCCCAGTTTATCAAGGAAATGTGCACAGTGGAAGAACCTAATGAAGAATTCACCTCAAGGCATAGCTTGGAGtggaagtttttgtttttggatcacagGGCTCCTCCAATAATCGGTTACTTGCCATTTGAGGTTCTTGGCACATCTGGCTACGATTACTACCATGTGGATGACCTGGAAACCTTAGCAAAATGCCATGAACATTTAATGCAGTATGGGAAAGGAAAATCCTGTTACTACAGATTCCTCACCAAAGGGCAACAGTGGATTTGGCTCCAGACTCACTACTACATTACCTACCACCAGTGGAACTCCAGACCAGAATTCATTGTctgtacacacactgtagtAAGCTACGCTGAAGTGAGGGCAGAGCAACGGCGAGAGCTTGGGATTGAAGAGTGTACTCCAGAAATTGCTGCTGATAAGAGCCAGGACTCGGGGTCAGATTCCCAGCTGAACACAGTCAGTCTGAAAGAAGCTCTGGAGAGATTTGATCACAGCAGGACTCCCTCTCCGTCCTCCAGGAGCTCTCGGAAGTCCTCCTCTCACACTGCTGTGTCAGACCCCACCTCAACACCAACTAAGCTACAAACCGAAACAAGTACCCCACCCCGACAGTCTATGGCATCAGCTATTGAAATGACCTCTCAGAGGAGATCGTCCATAAGCAGTCAAGTTAGTCAGCAATCAATGAGTTCTCAAAATACAGGCCAGACTATGGGCCAGCCTATGATAACGCAACAGCCATCCACCTTACAGATTCAACCCAGCATGTCGCAGCCCATGTTACAGTTCTCTGCTCAGCTCGGCGCTATGCAGCACCTTAAAGACCAGCTGGAGCAGAGGACAAGGATGATCGAGGCCAACATCCAGAGACAGCAGGAGGAGTTACGCAAGATTCAGGAGCAGCTCCAGATGGTTCAGGGACAGGGCCTGCAGCAGGGCCAGCAGTCATTACGGACAGCACACAGCCAGCAGACCTCCCTGCCCAGTCAGACTCAGAACGCACTCCCACCCTCACTCTATAACACTATGATGATCTCTCAACCTGGATCAGCTAATGTGGTTCAGATTGCATCCAGTTTGCCACAAAACACCAATCAGAGTGGCACTGTGGCCACTTTCACTCAGGACAGACAGATACGaCTTCTCGATTGCTTCACGGCAACCAGTCCACCCAGCTCATCCTGCAGGCTGCGTTCCCATTGCAGCAACAGAACACTTTCACTCAAGCACACCaccagcaacagcagcagcagcagcagcagcagcagcagctctccGGACACAGGACCGACAGCATGTCTGATCCCTCCAGTGTGCAGCCCCAGTAACCCTGTCCTGCTCTGTCAGATGTTTGTACTGAGCGTAAGAGCAGTCTAAGAGGCTTGAAATGCAGTATTCAGCATGCACCTCCGCAGTTCCTTAGAGGTGCTACATGTTCACAAGCAATGGATCACTACAGTGGATGGTTACCCAGGATGCAACGGGAGGCAGGGCAGCCTCGAGCAGCAAGCCGGCTGTGTTCACACGGCAACACATTGGGAGGCGCTGCAGAGAGAACGCACCGAGACCTGACTCCTGGCGGCGGGAGAGCAGCACCCAGGTTCTGACCGTTTCCCTGTCCTTCTCTTACTCTTCgcaattgcattttcaagcagttgttttaatttatgcagAGTGttcaagcagaaaaaaaaacctgctgcctctttttattttgtggctgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatga

Function

GO:

id name namespace
GO:0009266 response to temperature stimulus biological_process
GO:0032922 circadian regulation of gene expression biological_process
GO:0009648 photoperiodism biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K02223 CLOCK, KAT13D; circadian locomoter output cycles kaput protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113539 lncRNA downstream 5392 8289765 ~ 8381670 (-) True G91016
TU113525 lncRNA downstream 99945 8286889 ~ 8287117 (-) True G91005
TU113512 lncRNA downstream 157501 8229315 ~ 8229561 (-) True G90992
TU113485 lncRNA downstream 222157 8164654 ~ 8164905 (-) True G90965
TU113484 lncRNA downstream 224949 8161535 ~ 8162113 (-) True G90964
TU113611 lncRNA upstream 187142 8603621 ~ 8605626 (-) True G91064
TU113678 lncRNA upstream 316281 8732760 ~ 8735232 (-) False AMCG00017531
TU113900 lncRNA upstream 1178451 9594930 ~ 9595162 (-) True G91294
TU113903 lncRNA upstream 1216166 9632645 ~ 9632859 (-) True G91297
TU113904 lncRNA upstream 1246085 9662564 ~ 9662788 (-) True G91298
AMCG00017516 mRNA downstream 37074 8329147 ~ 8349988 (-) True AMCG00017516
AMCG00017512 mRNA downstream 225618 8142440 ~ 8161444 (-) True AMCG00017512
AMCG00017513 mRNA downstream 344608 8023656 ~ 8042454 (-) True AMCG00017513
AMCG00017506 mRNA downstream 395622 7989793 ~ 7991440 (-) True AMCG00017506
AMCG00017507 mRNA downstream 535841 7843646 ~ 7851221 (-) True AMCG00017507
AMCG00017520 mRNA upstream 57011 8473490 ~ 8514803 (-) False AMCG00017520
AMCG00017524 mRNA upstream 190580 8607059 ~ 8627186 (-) True AMCG00017524
AMCG00017529 mRNA upstream 247171 8663650 ~ 8677813 (-) True AMCG00017529
AMCG00017530 mRNA upstream 263334 8679813 ~ 8694359 (-) True AMCG00017530
AMCG00017528 mRNA upstream 285399 8701878 ~ 8730713 (-) True AMCG00017528
TU113456 other downstream 390467 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 554470 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 1273881 7112436 ~ 7113181 (-) True G90749
TU113210 other downstream 1472272 6888722 ~ 6914790 (-) False G90746
TU113104 other downstream 1998024 6387252 ~ 6389038 (-) True G90715
TU113572 other upstream 80016 8496495 ~ 8514955 (-) True AMCG00017520
TU113686 other upstream 338809 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 1944821 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 6016679 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 7450468 15866947 ~ 15867647 (-) True G92124

Expression Profile