RNA id: AMCG00017520


Basic Information

Item Value
RNA id AMCG00017520
length 885
RNA type mRNA
GC content 0.48
exon number 10
gene id AMCG00017520
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8473490 ~ 8514955 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCCAACTCTCTGCCAACACAAGCCTCTCCACAGCGGCGAGGCGGCGAGCAGCGGCTGCAAGAGCGCCAGCAGCCGCGCAATGAGGAGCCCCCCCTGCACCGCCGGCCTGACCCTGCTGCTCCTGCTCGTCTCGACGATACCAGCCTGCAAAAACCTCCAGTCTCAGgaTTTAAAAGCAAGGGACCACACTAAAAGGGGGGAGGTGGCTTCATATCATGAATACCAGTCAGCCAAGAAACGGAAGAAGATCAACTTCCTTTGTCTAAAAGATAACAGTTATAAATGTATGAGTTTTGAAGAACTGGAGAAAGCAAAGGATGATTTTGATGAAGAGGATCAGCGACTGATAGAATTGTTCAGACAAAGATGTATTACTGAGTGGAAATCTAATCCAAAAGGAAAACCATTTGGGGAGCTGTGTGAAATATTTGGAGACCAATATGTGAGGGAGGTCACACAGGCTGGAGAAGATGTATGGGTCGTGCTGCACCTTTACAGACCAGGaatacTTCTGTGCAGACTCCTCAATCAGCACTTCAATCACCTGGCCCAGAAGTTCCCAAAAACCAAATTCCTGAAAATCATAGCTGAGAGTTGTATTCCAAACTACCCTGACAGGCATTTGCCCACTGTCTTTGTGTACAAGAAAGGGCAGATTCATGCACATTTAATTGGCGGGGCTCAGTGTGGTGGACAAAACGTACTGGAAGAAGAAATAGAGGGGACACTGACCGCTATTGGGGCAGTTCAGACAGATATCAGGCACCCCACAGAAGAGGCAATCGTGCACTTTGGTGTCTGCGGCTCATGTTTCATAGATGAGGTTTACATGTGTTCAGATTCAAATGCACATCGGAATATCAGCACAATAAACAcgtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113539 lncRNA downstream 91820 8289765 ~ 8381670 (-) True G91016
TU113525 lncRNA downstream 186373 8286889 ~ 8287117 (-) True G91005
TU113512 lncRNA downstream 243929 8229315 ~ 8229561 (-) True G90992
TU113485 lncRNA downstream 308585 8164654 ~ 8164905 (-) True G90965
TU113484 lncRNA downstream 311377 8161535 ~ 8162113 (-) True G90964
TU113611 lncRNA upstream 88818 8603621 ~ 8605626 (-) True G91064
TU113678 lncRNA upstream 217957 8732760 ~ 8735232 (-) False AMCG00017531
TU113900 lncRNA upstream 1080127 9594930 ~ 9595162 (-) True G91294
TU113903 lncRNA upstream 1117842 9632645 ~ 9632859 (-) True G91297
TU113904 lncRNA upstream 1147761 9662564 ~ 9662788 (-) True G91298
AMCG00017519 mRNA downstream 57011 8387062 ~ 8416479 (-) True AMCG00017519
AMCG00017516 mRNA downstream 123502 8329147 ~ 8349988 (-) True AMCG00017516
AMCG00017512 mRNA downstream 312046 8142440 ~ 8161444 (-) True AMCG00017512
AMCG00017513 mRNA downstream 431036 8023656 ~ 8042454 (-) True AMCG00017513
AMCG00017506 mRNA downstream 482050 7989793 ~ 7991440 (-) True AMCG00017506
AMCG00017524 mRNA upstream 92256 8607059 ~ 8627186 (-) True AMCG00017524
AMCG00017529 mRNA upstream 148847 8663650 ~ 8677813 (-) True AMCG00017529
AMCG00017530 mRNA upstream 165010 8679813 ~ 8694359 (-) True AMCG00017530
AMCG00017528 mRNA upstream 187075 8701878 ~ 8730713 (-) True AMCG00017528
AMCG00017531 mRNA upstream 218612 8733415 ~ 8748743 (-) True AMCG00017531
TU113456 other downstream 476895 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 640898 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 1360309 7112436 ~ 7113181 (-) True G90749
TU113210 other downstream 1558700 6888722 ~ 6914790 (-) False G90746
TU113104 other downstream 2084452 6387252 ~ 6389038 (-) True G90715
TU113686 other upstream 240485 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 1846497 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 5918355 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 7352144 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 7515599 16030402 ~ 16030905 (-) True G92129

Expression Profile