RNA id: AMCG00017524


Basic Information

Item Value
RNA id AMCG00017524
length 3545
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00017524
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8607059 ~ 8627186 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAGCTGGCCAGTGGCATAAGGAGCAAAATAcacaagccAAAGCTTGTTTTTACCATGGAAACAGAGAGGAGACGGCAGGGCAAATTCCAGCCACTCAAGAAACTGtttgggaaaaagaaaaagagctcCCCGACTGCCTTTGTGGAAGCTAAACTGAAGAGCAGCCAATCCACCGGAGAAATCTGCAATGGGGGGCTTTCGGAAGATGAGGAAACCAATGAGCATTTAAGGTCATTAAACGAAATGGGTACTCGTGCTTTTTCACATGACAGTATTTTCATCCCAGACGGATCAGAAGAAGGTGGAAGCTCCGAGACAACCATGTCCCAGGAAAGCGTCTCTGACAAAGTTCGAAGCCTCCAGAGACAAATTGCCCACAGTATTAAATTTGGGCAGAAACCGGCCTCCTTTAGGAAGAGTACAGAGGCCGAGGGCAGTTCAGATGAGGAGGAGCTGCCAAGAAGTCCCTTAAAAGTCATTGCCCAAGTTGAGGCAAAGCCAGCAGAGGGTGAGACTAAGGATACTCCAGTAAAATCTCCAAGGACAAAAAGAGCATTTTATGGCACTATAGAATCTATTAATCTTGATTCAGTCCCACTCTCTGTCCCCCGATTGGACAACGCTGCTGCTAAACACAAGCTAGCTGTAAAGCCAAAAAATCAGAGGgatcTGCAAGATCTTTCTCTGCCTGGTACACTGCAAGAGGAAACAGATGTTCAGAAGCATGCAGACAGTCTGCCCAAGCCAGTGGAACATCAGCTCAGCAGATCCAAAGAACAAAGCACACATGATGAAGAACAAGGAATGGATTTCTGCATGactgaaaatgaatctctggagGAATCAAAGAAAATTCAAGAAGAGTCAGGCCTGCTTGAAGACCTTCAGAGGCATGAGGAACAAAGAATACAGGAGGCTGAAGcacagatacagagagaaaTGGAAGAGAAGAGACAGACTGAAATGGAAGAACAAAGGCGGTGTGAAATAGAAGAGCAGCAGAAGTTAGAGGCTGAAAAGCAGAGGCagaagaaggaggaagagcACCGTCTCCGTGAGGCGGAGGAACGTAGAAAGGAAGAAGAAAGGAGGCTGCGTGAGATAGAGAGCGAGAAACAGAATGAGCTGGAGAAGGAACGACTACGCAAAGCTGAAGAAGAGAGATTGTGGAAGGAGGAgcaacagagacagagagaaatggaggagaaaaaacaacGCGAATTAGAAGAGGAACAGAATCGGCTAGCTGAAGAACAAAAGGAAGAGGAGCGGAAGAAACGAGATGCTGAAAACAGACTCCGTGAAATAGAGGAACAGAGGCAACATGAAGAAAGGCTCCGCAAGGAAGCAGAAGAAAAGAGGCTCCaagaggaaaaagaagagaaactACGGCAGGCTGAAGAGGAGAGACTTCGTCTgatggaggaggagatgcaACGTGAAGCTGCGAAGAGAAAGCAACGAGAACTGGAGGAGCAGAAATTTAGAGAGCTAGAAGAACTGAGGcttcagaaaaagaagaaactggGAGAGCAGACTGCAGAGAACCAGGAAAGAATGGAAGAAGAGAGGAAACAatcaggagaaaaaaacaagcatctAGAGGAGCCTGAGAAAGCCACAGCCTTGCAAGAAGAGAGCCCCGATCCACAAGAGCAGAAGAGAAAAGCAGAGGAGCTGCGATGGAGAGAAATGGAGGAGAGGCAAACCACGCCCAGACCTTTCACATTTAAAGTGTCCTCGGgagaaaagcagtttttatttgAGAAGGTGAATCTAACACCTGTGACACCTTCAACCCAACAGAGTAGTGTCCCAGATGCAAAGGAGTTCAAGACTTCTCCAAAAGGTGCAGCCCCTCATTCTCTTCCATCTTCCTTGTATGTCCCCCACACAGCAATTTTGGTAACAGGTGCTCAGCTTTGTGGAACAGCAGTGAATCTCAACCAGATTAAGGATACAGCATGTAAATCTTTGTTGGGTTTAGCTGAGGACAAGAAAGCAATGGATATACCCCCAATTTCAAGTTTAAAGAAAACTTCACCTGAAAGGAAATCTAGCAAAACTAAATCACTAAACGAATCTTCTGGAGATCAGTCCAGTGCTGCAATGTTGGCTGAGTGGGCCAGCATAAGGTCCAAGATTTTTAAAAGTGCAGAAAATGGAACATTTAATGAGAAGGATATAAAACATCACAGCAGACCTACTAGTGATAATTATAACCAAAAAGCATTGTCGGGCTTACACAGCAGCCTTAGAAAAACCATGTCGGCGAATGCGAAGTTCTCTATCACACCTGCGTGGCAGAAATTTACAGAtggtaacaaaacaaatgagaatAAGAGTATCAAGGCTGTGAGTCCAGAGGAAAAAGACAACTCAGAAATTGAGTCATGCTTCCCTGACATTGATTCAATTCATTCTGCTCCTTTAGTCTCTAAAACCCAAGACAAACCTAGTAAGTCTGTTAGGATAGCAGACAGCACTGAAGGGTGTGTATTTGCCAAAGATCTTCCATCTTTTCTGGTCCCAAGCCCTCCCCATGGTTCCAGCAAGGTTCGCTCTATATCAGAGCCACAGAGCCCTCCCGGAGACTCAGAGGATGCTGGAACCAACAGAAAGGGACATCTTGGCGAAGAGAAGCTCTCTCCATTTGGAATCAAGTTGAGAAGGACAAACTACTCCCTCCGCTTTCACTCTGAACAGCcaacagaaaagagaaagaaaaggtaCAGTGCTGGAGATAGCTTCGAAGGTATCCCAACTCCCCTCATCGCCACTGCGTCTGACAGAGGTGCACCTGTGTTTTCCAATGTGTCTAGTCCCACACCCTCATCTTTAAGAGAGAGATCGAGCAATAGTGCCACTGAAATGCCACAGGTCGCCACAGAGCCTAAACTGAAACCAAGTAAAATTGTCATTCCAGTAATACGCAGCGAGAGTGAAAAGCTGCTTTCCAAGCCCCCGTTGTACCAGAAACCTTTGCTAGCTCCCAAACCTGTCAGTGTAACTCCTCCTTCATCTCCACTTGCTAAAATGGACAAGTATAGTTTCGGTGACGTGGTAGCCCAAAGGACTACAACAGAGGACTTAGCCTTAAACCAGAAAAAGGAGGAAAGAAGAGGAGAAGCAACAGCCCAGCTGCAAAAGAAACagcaagaggaggaggagccgaAGGAAAAAAGGTCATTTTTCCCTTCCATCAACATACCCTGGAGGGAGAAAACAGACAGGAAAACAGAGCTCATCAGACGAGaaaAGCCAGCACTTCAAAGTAGGCATTCTCTTGATAGCTCCAGGGTATCTGAGAAGGGGGAATCCAGTCAGCCTCTCTGGATCACATTAGCCCTGCAGAAACAGAAAGGCTTCCGAGAACAGCAGATGAGCCGAGAGGAGAGGAAGCAGATGAGAGAAGCCAAGCTGgttgaaaaacaagcaaaggAAAATGAAGCAGCAATAACACAGTGGAGCCCAAACCCCCCGCAcaggaggaggaaaagaaacCAGACTCTCTTCTGTCCAGATTTGAACGAAGGGAACAAC

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0007215 glutamate receptor signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113611 lncRNA downstream 1433 8603621 ~ 8605626 (-) True G91064
TU113539 lncRNA downstream 225389 8289765 ~ 8381670 (-) True G91016
TU113525 lncRNA downstream 319942 8286889 ~ 8287117 (-) True G91005
TU113512 lncRNA downstream 377498 8229315 ~ 8229561 (-) True G90992
TU113485 lncRNA downstream 442154 8164654 ~ 8164905 (-) True G90965
TU113678 lncRNA upstream 105574 8732760 ~ 8735232 (-) False AMCG00017531
TU113900 lncRNA upstream 967744 9594930 ~ 9595162 (-) True G91294
TU113903 lncRNA upstream 1005459 9632645 ~ 9632859 (-) True G91297
TU113904 lncRNA upstream 1035378 9662564 ~ 9662788 (-) True G91298
TU113906 lncRNA upstream 1048360 9675546 ~ 9675779 (-) True G91300
AMCG00017520 mRNA downstream 92256 8473490 ~ 8514803 (-) False AMCG00017520
AMCG00017519 mRNA downstream 190580 8387062 ~ 8416479 (-) True AMCG00017519
AMCG00017516 mRNA downstream 257071 8329147 ~ 8349988 (-) True AMCG00017516
AMCG00017512 mRNA downstream 445615 8142440 ~ 8161444 (-) True AMCG00017512
AMCG00017513 mRNA downstream 564605 8023656 ~ 8042454 (-) True AMCG00017513
AMCG00017529 mRNA upstream 36464 8663650 ~ 8677813 (-) True AMCG00017529
AMCG00017530 mRNA upstream 52627 8679813 ~ 8694359 (-) True AMCG00017530
AMCG00017528 mRNA upstream 74692 8701878 ~ 8730713 (-) True AMCG00017528
AMCG00017531 mRNA upstream 106229 8733415 ~ 8748743 (-) True AMCG00017531
AMCG00017532 mRNA upstream 145023 8772209 ~ 8780221 (-) True AMCG00017532
TU113572 other downstream 92104 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 610464 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 774467 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 1493878 7112436 ~ 7113181 (-) True G90749
TU113210 other downstream 1692269 6888722 ~ 6914790 (-) False G90746
TU113686 other upstream 128102 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 1734114 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 5805972 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 7239761 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 7403216 16030402 ~ 16030905 (-) True G92129

Expression Profile