RNA id: TU113671



Basic Information


Item Value
RNA id TU113671
length 852
RNA type TUCP
GC content 0.61
exon number 6
gene id AMCG00017527
representative False

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8751713 ~ 8764903 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGTCACgaactgcagagagagcagaCGAGTGCGCAGTTTCTTTCTAATAAACGAGCTCCGGCACAGACTCCCTACCATCTACCGACTCGGCACCATTGTCACTGGGGTGAGAGAAAACTGCGGAGACCATGCAGGCTCAGAAGAAGCTGCTGAACAGTGTTGAGGGCTGTGTGGACGATGCCCTGTGGGGGCTGGTGAGCGGCTGTGGGGgtctgtctgtgctgcaggGGCATCGCGTGGCCCTGCGCTCCGACCTGGAGGCTCTGAAGGGCCGCGTTGCCCTGCTGTCTGGGGGCGGATCGGGGCACGAGCCAGCGCATGCagGCTATATTGGCAGAGGGATGCTGTCGGGGGCAGTAGCTGGGGCTGTGTTTGCTTCGCCCCCTCCCGGCAGTGTGTTGGCTGCAATCCTGGCTCTGTGGCGGGTTGGGGCGACAGGTGTGCTTCTCATTGTGAAGAACTACACAGGTGACCGCCTCAACTTTGGTCTAGCGCTGGAGCAGGCCCGGGCACAGGGGGTGCCTGTGGGCATGGTGATTGTGGCTGATGACTGTGCCTTCGCCGTGCCGAGCAAGGCTGGGAGGAGGGGCCTGTGCGGTACTGTGCTGATTCACAAGCTAGCTGGGGCGCTGGCAGAGGAAGGGTGTCCCCTGGAGGAAATAGTGCAGAGAGTGACCGAGGTGGCCAGAGGGATCGGTACTCTGGGGGTCAGTCTGTCTCCATGTAGTGTACCTGGATGCTGCCCAACCTTTGACCTGCCACTAGGGGAGATGGAGCTGGGACTGGgAATCCACGGGGAGCCTGGCATcaagaggtcaaaggtcagtgAAATGATACTATCATGCAGGtgta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU113664 lncRNA upstream 19081 8732368 ~ 8732632 (+) True G91104
TU113524 lncRNA upstream 464985 8286292 ~ 8286728 (+) True G91004
TU113511 lncRNA upstream 522137 8229315 ~ 8229576 (+) True G90991
TU113438 lncRNA upstream 761753 7989696 ~ 7989960 (+) True G90924
TU113436 lncRNA upstream 783385 7968120 ~ 7968328 (+) True G90922
TU113695 lncRNA downstream 30086 8783867 ~ 8784089 (+) True G91128
TU113705 lncRNA downstream 65932 8819713 ~ 8824837 (+) True G91135
TU113726 lncRNA downstream 84866 8838647 ~ 8841038 (+) True G91151
TU113913 lncRNA downstream 1412749 10166530 ~ 10166747 (+) True G91307
TU113916 lncRNA downstream 1543621 10297402 ~ 10297808 (+) True G91310
AMCG00017526 mRNA upstream 50959 8688089 ~ 8700754 (+) True AMCG00017526
AMCG00017523 mRNA upstream 97371 8647446 ~ 8654342 (+) True AMCG00017523
AMCG00017521 mRNA upstream 150058 8591169 ~ 8601655 (+) True AMCG00017521
AMCG00017522 mRNA upstream 165042 8567667 ~ 8586671 (+) True AMCG00017522
AMCG00017525 mRNA upstream 185902 8560132 ~ 8565811 (+) True AMCG00017525
AMCG00017533 mRNA downstream 45554 8799335 ~ 8806468 (+) True AMCG00017533
AMCG00017534 mRNA downstream 53234 8807015 ~ 8808994 (+) True AMCG00017534
AMCG00017538 mRNA downstream 115333 8869114 ~ 8969478 (+) True AMCG00017538
AMCG00017543 mRNA downstream 264098 9017879 ~ 9021042 (+) True AMCG00017543
AMCG00017544 mRNA downstream 332796 9086577 ~ 9103203 (+) True AMCG00017544
TU113646 other upstream 62307 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 618859 8132368 ~ 8132854 (+) True G90955
TU113388 other upstream 1058366 7692585 ~ 7693347 (+) True G90881
TU113384 other upstream 1079863 7668183 ~ 7671850 (+) True G90877
TU113137 other upstream 1566923 7019218 ~ 7184790 (+) False AMCG00017486
TU113887 other downstream 765992 9519773 ~ 9583280 (+) True G91281
TU114078 other downstream 3125833 11879614 ~ 11880499 (+) True G91452
TU114568 other downstream 5283095 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 6323544 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 6358829 15112610 ~ 15116031 (+) False AMCG00017650

Expression Profile