RNA id: AMCG00017528


Basic Information

Item Value
RNA id AMCG00017528
length 5409
RNA type mRNA
GC content 0.56
exon number 31
gene id AMCG00017528
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8701878 ~ 8730713 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCCCCCGCCTGATGCGCGGCTGCACTGCCTCCCAGGACGGGCTGTCCGCAATGACGGCGGGGCAGTGAGCCCAGAGAGCCGCAGAGAGAAGCGGGCGTCCCGGCTGCCGTGCGGGATGCTGGCGCTGAGGTGCCTGTGCCTGTGCGCGCTGCTGTCCCGGGCGGACTGCCGGCTGCTGCCCGGCGCACGGAGGAGGGCGCAGAGACTGTACTCGCCGCAGCTGCACAGCCACAGACCTCGTTCGGGCCCCCACAGGTGCCAGTCTGGAGGGGGGAGTGTGTGCTGTCCTGGCTGGGCCCCCTCTGCTGTGAGCGGCCTCTGTCTGACACcgGTGTGTCCGTTGGGCTGTGGCAGTGGGCTGTGCATTGCCCCCAATCTGTGCCTGTGCCATGGAGGGAAGCAGGGATTCACATGCCAAGGCGAGGGCCGTGCCGCGGGGTTCCCATCTGATGACTTCGCAAACAATTCCCAGCTGGAGGGAAGTCCCGCCTCCTGCCTGTCTGCAGGCTGTGAACACACCTGTGTTATGATTGGAGGATTCCCAGTCTGCAGTTGCTCCCTGGGATACATTCTGGCCAAGGATGGACGCAGATGCCAGGGCTGTGGGCAGTATGGCTGTGAGCTCCTGTGTAATCATGGAGGCTGTGAGCTGGTTTCTCGGGTCTGTCCTGCAGGGTTCTCCATGACTGAGACGGACAGCGGAGTCACCTGCACAGATATTGATGAGTGTTCTGGGGGAAGGTCACCATGCCAGCAGCAGTGCCTGAACATTGCTGGAAGCTACCAGTGCTCCTGCCGTGCTGGATTCTACCTCCATGGCAATGGGCGCACCTGTGTAGATGTGGACGAGTGCTCCAGCCCCGCCCCCCCTCGCTGTCAGCAGCGATGTGTCAACACTGTGGGCAGCTTCCACTGCGCCTGTCGCCGTGGGTACCGCTACAGCAGCCAGCGACACACATGTGCAGATGTTAATGAGTGCGAGACTCTGGCCTTGGCTGTGTGCCAGCACTCTTGCCGGAATTCACCTGGTAGCTTCCAGTGTCTCTGCCCAGATGGACACAAACTGCACCCCAATGGCAGGAACTGCACAGATGTGGATGAGTGTGCTTCTCCTCTGTCCAGCCCCTGTGCCCAGCTGTGCATCAACACCCTTGGGAGCTTTCACTGCCACTGTCACCATGGATACAGTCTCAGCAGTGATGAGACATCCTGCACAGTGGAGACCTCACCTTGCCTGACTTGTCAGAGTCAGTGTCCTCCAGGAATGATGCTGTTACCCAATGGTGTTGACTGTACAGaTGGGCCTGATCCCCTGGACTCTCCCCCTGTTCTCCAGGAATCTCCTCTGCTCTTATCAATCAAGACGAGTCATTCCGCAGCTCCTGCCGCCACAGAGACGCTCACCTTTCCACCAGTCTATCGCTCTCCATTATTGACCTCTGTAGATCTGCCAAGCCTACAGGCCAGATTATCACACCCAACCTTCCAACCATCTCAGCCCTCTGTAAAAATGTTCAAAGCTACTCCTATAGTAGATAATGAGCTCTTAATAGCTCCCACCATAGAAACAACACTTACCACAGTACGTTATGTGGTTACCAACCATTATGTAGTCACTGCCACGGATTACACTCCTTTTGTAGCCAGTCCTAGCTCACACACTCCCCCTATAGCCACTCTCACTTCTGAGGTCTATCCTGCACTCCTTCCTACTGAACATCCCCATCCTGCCACCGGTCTGACCTCGAACATCCTCAGGACAGTACCTGCCTCCTTATCAACCCTTTCTACAGCTCCTCCACCCTCAAATGCCCTACCTACATCTGCTCTTGACTTCAGGACTACACCAGCTGTCTCCACCCTTCATTTACCACCTGCCAACATTTCTATAAATAGGGTGACTTTATACCCTCAGAGCTACCAGAGCCCCAGCCCTGTGCAGCTCTCTACAGTCAACAAAACAATTCATCATCATCGATCTGACAGCATCTTCCATGAATCCCTTTCTACCCTTCCTACAGCAGTGCCATATCAGACTGAGGCACTCACTTCCCTGCCCTCATTCAGCCTACATCTCCCAATCCCCACACCCACACTCACCCTAGAGGATGCCAGCTCCACACCCCTCACTCCCCCACACACCTTGCAAGCCTTCGATGTCACACAAACAACTCCCCAGCTGCTGACAGCCTCTGCCTTCCCCTATGGAGAAGCATCCTCTGCTTTGCCGGCCTCGACAAATCCTTCACCGCAGCCCCAAGTGGCCACACCCACACCTCCACTTTATTCCCACCAGCACAGCCCTTTCATCTCCAACACACTATCCGCCATCACCCAATCCCATGCCACGCTTGCCCAGCCCTCCCAAAACGCTGCACTCCAGCCCTCCAGACAGACACAGCTCACTCCATCAGACATGGACCAGCCCTCCCCACATGCCCAACACAACCCTCCCAGCATGCTTCTTCCGTCCTCACACACCCAGCCAACCCAAAACATCACACCTCAGTCCTCTGTACAGACACAAGCCACTCCATTTAGCACCATCCAGCCTTCCACACATATAGAGCCCACACCACTTAGTGCCCTCCAACCCTCCTCACTGACTTCCTCCTCAGGTCTGCTGTTAAGAGGCGCCACACTCTTGTCTCCTCCTTCACCCGTTGTTGTTGATTCAGAGCTTGATGTCTACCAACGTCTACTCACAGTAGAGCACCTGTTGAGGGCTGCACCCATTGGTTCCCCTCTCACCGATGAGTTGGCACCAGCGGTCGCCCTCCCCATCTTGGGTGTCCTGCCCACCGCCCctctcccctcactgtcctttTCTCCAGTGTTGACCCCGGCCTTGTGCCTCCACCAGGGGGCGCAATACAGTGAGGGCAGCAGCTGGATGGACCAGGACTGTCACAATTGCACCTGCATGGAAGGCTCTATGATTTGCCACAAAGTGACCTGCAGCGTTTCCTGTACCCACCCTGCCTGGGATCCTGAGCACTGCTGCCCCACCTGTAACCTCACTTGTGCCCAGCCTGTCCTGTCTGAGTGCTGCCCGCTGTGCCCAGTCCAGTGCAGGTACCTGGACCAGGAGTATGCAGAGGGGTCAGAGTTCTCTCCACCTGGAGATGGCTGTGCAACTTGTATTTGCCAGAATGGCCAAGTTGACTGTTACTACCCCCCGTGCCCCGTGCTGGACTGCTCCCCAGGGGACTGGGTGCGGGAGGCTGGAGAGTGCTGCCCATCCTGTGCgcaggaagagaaggagagagGCTGCTCTGTAGATGACAATGGGGTGGAGTTTCCTGTGGGACAGATCTGGTCTACTGGAGACCCCTGTGAGACATGTGTGTGCCAGgtggGTGGGCTGGTGGTCTGCCAGCGAACCCAGTGTGTAGAGGTCTGCCCCCACCCCATTCGTGTCCCAGGACAGTGCTGCCCTGACTGCTCCATGGGCTGTAGCTACAGTGGGATGGTGTACGAGAACAACGAAAGCTTCCTGTCTCACTCAGATCCCTGTCTCACCTGCATCTGTCTGGCTGGCTCTGTAGCCTGCTCCCCCATTTACTGCCAGCCCAACTGCACCTACCCATTCCACCAAGAGGGGGAGTGCTGCCCCCTATGTAATGACTGTAACTACGAGGGACGGAAAGTGTGGAACAGCCAGACATTCTCCCCGGAGAGCCAGCCATGTATCCAGTGCGTCTGTCAGTTTGGAGAGGTGAGCTGTGAGGAGATCACCTGCATTGTACCCTGCTCTCACCCCTATGCCCTGCCAGCAGAGTGCTGCCCCACCTGCACAGtgtgtctgtatgagGGACAGGCCCTGGAAGATGGAGGCTATTACATCTCCGAGGTGGACCCCTGCaccGGAGCGTCAGCTGTGAGTGGAGAGGGGACTCCTGTCCGGACCCGACCTGTGGTGGCCCACTCACACATCTGGCAGGACAGTGCTGTCCCGTCTGTCCAGGCGATCTCCCTGAAGGGGACCATGTCTATCGCAGCTTTTAAGGCTCATGTGCAGAAAAGTGTCCCAGCACCAGTGTCACACAAACTCTCTACTTTGCTTGGGATCAACCGTACAGCCATGGCTACCCCAGTGGCCAGACACACTGCTCAGGAGTCCCCAGCAGCACCGCCAGAGAAGTCCACCAGTTTGCCAATCACAACTCTGGAAACGGCCCATGCACTGAATCCTCTGTCCCATATGGTCTCACGCTCCCAAACCAGCACCTCCCCTCCACCCCTTGCTGCTTCACCAAACCAGACTCCAACCCCTGCCCTGGCTGCCCACCCCCAGCACACCAACAAACTGCATCAATTGTCCACTGAGCCAGAAACCTTAACCAGAGAGGGAGCAGAGGTAAAAGGAGACCCTCTAAAACAGCAGACCCCAGGCTGTGTGTTCCAGGGCTTGGTGTTTCCTGATGGTTCTGTGTTCTCTCCAGACTCCAGTCCCTGTGTGTTGTGCTACTGTGAGTGTGGTCTGTCGCAGTGCTGTGTGCCCAGTGCCGCCCGGCCTCAGAGCCGTACAGGATGCTTCCTGTTGCCATGCCTGCCCAGAGCCAATGGGATGAGGTTCACAAACGGGACAACTTTTAAGACAGAGGACTGCAGCAAGTGTGTGTGCACAGATGGAGAGCTGGTGTGCAGAAAGGACAGGCCGCACTGCCCTCCTCTTTCCTGTGCCGCCCCACTGGTCATGACTCCTCGAGGGCAGTGCTGCCCACAGTGTCCTGAGGACCAGAGCTGTGCCCATAAGGGTGAGCTGTACCAGGGGCAGTGTGGACAGAGGGCGCCGCGGTGTGCCAGTGTGAAGATGCCATTGTCCGCTGTCACTCCAATGCTCTCCCTCAGGACGGCCTGGACCAGTGGAAGACGAGTGACAGGATCAACAAAACCACAACTGATTAAAGCAAAAAGACAGATGAATATGTACTGCTCCAGTGAGAAAAGACACTATTACCACCCCCAGCCTCCACACTGACACCCAGGGAACAACGGCAAGTGGTTTTAGCCCAAAATAATCCTTGACATTTTCCCAACTGATCTCAGTCCACGAGTATTGATTGGTTGGACCTTGTTTACCAGTCAAAGCTATGAAAGCACAACAAAAAGTCTTAAAGGGAAGGGGAAAACAGCACATTAACAGTGAGCAGCTACAAAccaaatgttaattatttgtaaatatgtatgtgtatttgtaattgcTATTGAGTGTTTCTTGAATTCAGGATGTATGCCTTTCCTCTAGCTGTCCTTTGCAATTGTATCTTCACTTCTTGTAAACCAAAGAAATGTTTCCTCACTGTGTATATGGAACTCCATTGAACCTATGTTTGCAAGGTTCCTGACCACTTTAATGATTTTGATAATGTTCAAAAAATTattgtgttcaatttaaatgcat

Function

GO: NA

KEGG:

id description
K24519 VWCE; von Willebrand factor C and EGF domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113611 lncRNA downstream 96252 8603621 ~ 8605626 (-) True G91064
TU113539 lncRNA downstream 320208 8289765 ~ 8381670 (-) True G91016
TU113525 lncRNA downstream 414761 8286889 ~ 8287117 (-) True G91005
TU113512 lncRNA downstream 472317 8229315 ~ 8229561 (-) True G90992
TU113485 lncRNA downstream 536973 8164654 ~ 8164905 (-) True G90965
TU113678 lncRNA upstream 2047 8732760 ~ 8735232 (-) False AMCG00017531
TU113900 lncRNA upstream 864217 9594930 ~ 9595162 (-) True G91294
TU113903 lncRNA upstream 901932 9632645 ~ 9632859 (-) True G91297
TU113904 lncRNA upstream 931851 9662564 ~ 9662788 (-) True G91298
TU113906 lncRNA upstream 944833 9675546 ~ 9675779 (-) True G91300
AMCG00017530 mRNA downstream 7519 8679813 ~ 8694359 (-) True AMCG00017530
AMCG00017529 mRNA downstream 24065 8663650 ~ 8677813 (-) True AMCG00017529
AMCG00017524 mRNA downstream 74692 8607059 ~ 8627186 (-) True AMCG00017524
AMCG00017520 mRNA downstream 187075 8473490 ~ 8514803 (-) False AMCG00017520
AMCG00017519 mRNA downstream 285399 8387062 ~ 8416479 (-) True AMCG00017519
AMCG00017531 mRNA upstream 2702 8733415 ~ 8748743 (-) True AMCG00017531
AMCG00017532 mRNA upstream 41496 8772209 ~ 8780221 (-) True AMCG00017532
AMCG00017536 mRNA upstream 59469 8790182 ~ 8798194 (-) True AMCG00017536
AMCG00017537 mRNA upstream 84337 8815050 ~ 8834367 (-) True AMCG00017537
AMCG00017535 mRNA upstream 106140 8836853 ~ 8843458 (-) True AMCG00017535
TU113572 other downstream 186923 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 705283 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 869286 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 1588697 7112436 ~ 7113181 (-) True G90749
TU113210 other downstream 1787088 6888722 ~ 6914790 (-) False G90746
TU113686 other upstream 24575 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 1630587 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 5702445 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 7136234 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 7299689 16030402 ~ 16030905 (-) True G92129

Expression Profile