RNA id: AMCG00017529


Basic Information

Item Value
RNA id AMCG00017529
length 4146
RNA type mRNA
GC content 0.51
exon number 26
gene id AMCG00017529
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8663650 ~ 8677813 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTTAGCGCCATTTTCAAATGCTGTAGCTGTGCTTTACCGCCGAGAGAGTCCCCTGAAGCCGCCAGAGGAACAGGAAACCGGGGGAGGGACAAGAGCTCAACCGACTCTTTAAAGAAATGACGGGGACATCTGACAGCTAGACTTAACGCACAATTGAGCGGATTAAACTAAACAACTCTATAGGCAGTCGCGTAACAATATGTATACGTTTAAATCGTGGCCTGTCAGAAGAAGGGTGGCTGTATGACGGCAATGTTTATAAGCGAGTTGTGCTAAAACCAGACATGCAAGACATTTGATTTGCTCTTTAACGCGTCTGGCCGCACAGCTACAATGAGCAGCACCGCCGAGAGGAAGTTCATCAACCTGCGCAAACGGCTGGACCAGCTGGGCTACCGACAGCCTTTGGGCATCGAGTCCTTGCCTTTGGTGGAAAAGCTTTTCAGTGACCTTGTGCACACTACGGAAAGTCTGCGCAATGCCAAGCTCTCCGCTGGGAAAACCGAGAAGGAGAGCAAAAATTTGGATGCCTTGCTGGAGCCCTACAAAACAGAGAATGCCCGTCTGGTGAGGGAGAACAATGAGCTGCACCTGGGGGTGCTGAAgctgaaggaggagaaggacCGGCTCAGCAAAGACCTGAAAGCTAACATCAGGAGGCTTGAGCATGAGACGGCAGATCTGAAGTTTTTGAATAACCAGTACGTCCACAAATTGCGCGCCCAGGAAAAAGACAGCAAGGCGAAGACGGAAATGATCCAGCAGTTGCAGGAGAAGAACTTGCAGGCGGTCGTGCATACACCAGGTGGCAAGAAAAGGATTATTCCTTTCAGACGCCAGCGGATGCAGATCGATGAGTTCGTCCCTCCCTCCCCTGTGAAGTCACTGCCCGTCTCCCAGCCTGATGATCCATATATAGCCGACCTCCTTCACGTGGCTGATGACAGAATTCAGGAACTTCAGCAGGACGTGACGAAGCTACGTCAGGAATTGGAAAGAGCAGACGTGGAAATACGGCATCTGAACAAACAGGtctcggagagagagagagaaatcgaGCGCCTCGGTCGGGCCCTGCATGGCGGCCGGCCTCATGATGTCATCTCTCTGGAAGCTCAGAATATAAGTAATGAGAAGCTCATCTCTCATCTCAATCTGCAGATTGAATAccttcagcaaacaaactgtGACTTGGAAACACGAATGCAGGGGCttcaagagaggaaaaaaaatgccacCAGCGAAGTTGCCGATTTAAGTGCTAAAAATGAGGAGCTGTGCCAGGAGCTCACAGAGATCGATCAGCTGGCACAGCAGCTGGAAAGAGACAAAGAAATCGTGCTGGAGACGGCCGATAAGGAGCTTCAGGAAGCAAAGAAGGAGATCCAAAGACAGCACAGAAAAATAGAAGACCTTGAAGATGCCATAGCAAAGTTAAAAATGgATCTGACAGAAAGTCGTCATGAAAACGATAAGCTCCAGGATgaacatttggaaaacaaagaacagaATGAGAAGCTGGAGGGCCTGTTAAATTACATGGAAGAGGAGAAGCATAGACTTCAGGataaagtgaaaaaaatgaCAGACACTGAGAAAGAACTGGTTCTGGAGCTGGAGACGATGAAGACTCAGCACGGGGTCTGTGGCCGGGACAAGTCGCCCTCGCGCCTCGACGCCTTTGTCAAGAATCTGGAAGAGGAGCGTGACTTCTACAGGTCGGAGGCGGAGTGTCTCAGGAGGGCGGGCAGAGGAGCCAGTCCATGGAGGAGCCTGGGCAGCAAGAGGAGCCCAGGCCGAGGCTCAGATAACAGAggcGCGGACTGTGAGGCGGAGCTTCTGCTGGTAGTGCGAGAGAGGGATGAACTACAGGGTCTGCTGGACAGGTTTGAGAAACACATGATGGACATCCAGGCCAACGTCAAAGTGCTCACAGCAGAGCGAGACGAGCTGAGCTTTCTCTACGAGCAGGCCCAGGAGGAACTGAGCAAGCTGAGGAGGGAATCCATGAGATCTCCAAAGTCCCAGCCGTCTGCAGCCAGTGCCCAGGCTGTGCTGCAGCAcgtggaggaggagagggaagagGCTGTGGCTGACCTCCGCAGGATGACGGCGGAGAGGGACAGTCTGAGGGAGCGGCTCAAGGGCGCTCAGACATCTGCTCTCATTgacagagaagaggaagaaCAAAATATCCTGGAAATGAAGAATACCATTCACAAACTTGAACGAGAGCGTTACGATCTCCGGTCTCAGCTGGCAACACTGAAGGAAAACAAGGCAGCTCTTGAGGACGAAATGAAGGCGCAGTCCAGTGCCCTGGCTCAGAGGTCTGATGAAGCCTCTCATCACAGGGCAGAGGCCAGCTCCCTCAGATTGCTGAAAGAGCAGACGGAGAGGTCCCTTTCAGATGCTCAGCACCGTCTTTCTGTGAAAGTCAACGAGCTTCAAAATGCCCTTGAAAAGATACAAAAGCTCGAGGAAAGATTAGctgATTTCAGCAGGCAGAGCTCATCTCAGCGGGAGGAAGTGGCCATGCTGCAGAAGACCATCTCCTCTCTGGACAGGGAAAAGGACAACCTGCAGGAGGCTGTGGACGACAAGACCGAGAGGATCGCTGCCTTAGAGGATAACCTGGCCAACAAGGAAAAGACTCTGACTGACTTGCGACTCACTGCTTCTGAGATAGAAGATTCACTAGAACGGCTGAAGGACACACTGAGCAATCGCGAGCGTGAAATTGCCAGCCTGCGGCGCCAACTCGATGTGGCTCGAGAAGAACTGGCGGACGTGGGCCATTCTCGAGAGATTGCACTGCGGGAAAACCGGAGGCTGCAAGAGGACCTGGCTACGATGACCAGGGAAAACCAGgcCATTAATCTAGAGCTGGAAGAAGCTATGCATCAAAAGGATGAATTGAAAACCAGGGTCCACACTTACATTTCTGAAGTGGCTAGGATAGAAAGCTTGATGGCTGCGAAGGAACAGGAGAACCACGATATCTTGGAGCGGTTCCGACTGGCCCACAGCCAGGCTGAGGACTGGGAGTTAAAGCTCCAGCAGGCCGAGGGACACAACAGCTCGATCAAACTGGAGCTGCTCTCCACTGACACGGAGAGGCGGCAcctgagagagagtgtgcacaacctggagagagagattcaAGAGGTACTGAACCATTTGAATGCACAACAAGCATATGAAACGCAGATCTCCTCTATGGCCAAAAACATGTCCCGGCTGGAGGATGAAGCAAGGCAGGCTCATGCAGAGAAGAACAGTGTTCTGTCCGACATCGCCTCTCTCAGGGAACTCTGCGTCAAACTGGACTCCAGCAAGGAGATGATGTCACGGCAGCTCACGTCTAAAAGCATGGAGTACGAGAGGGCCATGGGCGAGCTGGAAGATGTGAAGTCTGAGACCGAACTCTTGAAGAAGCAGCTCTCCAGCGAGAGGTTGACTATTAAGAATCTGGAGACGCTCCTGTCCAGTAACCGAGAGAAGGAGTTTCAGATCCACCTCAGCTCTCATGAGAGGGAATCGGAGCTGAAGATCCTGAGGGACCGCCTCACCTTAGCCGACAGTAAAGCTACAAGCCAGTCCAGGGAAGTAGCCCAGCTCAGGAGTAAAGTGACTCACCTACAATCAGAGCTGGACGTCCACAAGCGACAGCTGACGACAGAACGCTTTGAAAGAGAGCGTGCAGTGCAGGAGATGCGCCGGCAGGGGATCTCCTTCTCGTCCCTGCGGAGCCCGTCTCCTCTGAGCTCGTCCCTCAGCCCTCTCTCGCGCTCCCGCTCCCCTGAGCGCTCCATCCTGCGCTCCACAGACGGCACGGCGGACAGGTCCCCAGAGAAGAGTGTGAGTTTTAAAGAATAGATGGATGATACAAAGACTCCAGATTCCGCCCAGAAATCACACATCTCTACCTCTGTTACTGACCACCTCCAATGATCTACAAGATCATTTGTCATACTCTAAAAACGAATTTGTTTGCGTTTTATACTTAATCCACTGCTTTAGAATGCACTTGATtaatggtgtgtgtatatatgtatttaaaataaatctatgaagtttttttttatgccagTGAAGTTTTGTTCAGTCTAATTTCTTTGAAGGTCAAATATGTAAACATGGC

Function

GO: NA

KEGG:

id description
K16461 CEP135, CEP4; centrosomal protein CEP135

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113611 lncRNA downstream 58024 8603621 ~ 8605626 (-) True G91064
TU113539 lncRNA downstream 281980 8289765 ~ 8381670 (-) True G91016
TU113525 lncRNA downstream 376533 8286889 ~ 8287117 (-) True G91005
TU113512 lncRNA downstream 434089 8229315 ~ 8229561 (-) True G90992
TU113485 lncRNA downstream 498745 8164654 ~ 8164905 (-) True G90965
TU113678 lncRNA upstream 54947 8732760 ~ 8735232 (-) False AMCG00017531
TU113900 lncRNA upstream 917117 9594930 ~ 9595162 (-) True G91294
TU113903 lncRNA upstream 954832 9632645 ~ 9632859 (-) True G91297
TU113904 lncRNA upstream 984751 9662564 ~ 9662788 (-) True G91298
TU113906 lncRNA upstream 997733 9675546 ~ 9675779 (-) True G91300
AMCG00017524 mRNA downstream 36464 8607059 ~ 8627186 (-) True AMCG00017524
AMCG00017520 mRNA downstream 148847 8473490 ~ 8514803 (-) False AMCG00017520
AMCG00017519 mRNA downstream 247171 8387062 ~ 8416479 (-) True AMCG00017519
AMCG00017516 mRNA downstream 313662 8329147 ~ 8349988 (-) True AMCG00017516
AMCG00017512 mRNA downstream 502206 8142440 ~ 8161444 (-) True AMCG00017512
AMCG00017530 mRNA upstream 2000 8679813 ~ 8694359 (-) True AMCG00017530
AMCG00017528 mRNA upstream 24065 8701878 ~ 8730713 (-) True AMCG00017528
AMCG00017531 mRNA upstream 55602 8733415 ~ 8748743 (-) True AMCG00017531
AMCG00017532 mRNA upstream 94396 8772209 ~ 8780221 (-) True AMCG00017532
AMCG00017536 mRNA upstream 112369 8790182 ~ 8798194 (-) True AMCG00017536
TU113572 other downstream 148695 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 667055 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 831058 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 1550469 7112436 ~ 7113181 (-) True G90749
TU113210 other downstream 1748860 6888722 ~ 6914790 (-) False G90746
TU113686 other upstream 77475 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 1683487 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 5755345 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 7189134 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 7352589 16030402 ~ 16030905 (-) True G92129

Expression Profile