RNA id: AMCG00017530


Basic Information

Item Value
RNA id AMCG00017530
length 2944
RNA type mRNA
GC content 0.42
exon number 11
gene id AMCG00017530
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8679813 ~ 8694359 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGTTTGAGGAGCTGGGGATAGGGGAGGAGTGCGGCGTGTTCGGCTGTGTGGCTGCGGGCGAGTGGCCGACGCAGCTGGAGGTGGCTCAGGTGCTCACACTGGGGCTGGTAGCGCTGCAGCACAGGGGACAGGAGAGTGCTGGAGTTGTTGTAAGTGATGGAGCCTCACCACCAACTTATACTGCACACAAGGGCATGGGTCTGGTGAATGCTGCCTTCCAGCCACAGGATTTACTAAAGCTGCGCTACGGGAGTCTAGGTATAGGCCACACGAGATACTCCACCACAGGGATATCGGAGCTGCAGAACTGCCAACCCTTTGTTGTTGAAACGCTGCATGGAAAGATCGCTGTTGCCCATAATGGAGAGCTGGTGAATGCCCAGAACCTGCGTCGGAAGGTAATGCGACATGGTGTCGGCCTATCAACCAGCTCTGACAGCGAACTGATCACCCAGTTGCTGGCTTTGACTCCGCCCCTCGAGGAACTGGATGCTCCTGATTGGGTGGCTCGGATAAAAAACTTGATGACTGAAACTCCTACTTCATACTCTTTGCTGGTAATGCACAAAGATGTGATCTATGCAGTCCGTGACCCGTATGGAAATCGACCTCTTAGTATAGGTCGCCTTGTTCCCATTTCCAGATTACACAGCGCagGACACACCGATGGAGACACCGAGGGCTGGGTCGTGTCCTCCGAATCCTGTAGCTTCCAGTCAATTGGAGCACGGTATTACCGTGAAGTCCTACCTGGGGAGATTGTACAAATCTCGAAAGATGGAATTAAGACATTGTGTGTTGTGCCAAGACCAGAAGGGGATCTCCCAGCTTTTTGCATATTTGAATACGTGTATTTTGCAAGACCAGACTCAATATTTGAGGGTCAGATGGTGTATTCTGTACGGCAGAGGTGTGGCCGTCAGCTTGCCATTGAGGCTCCAGTAGATGCAGATGTAGTGAGTACAGTTCCTGAGTCAGCCACTCCAGCTGCACTGGGTTACGCCCAGCAGTCTGGGCTGCCGTATGTGGAGGTTCTTTGCAAGAATCGCTACGTGGGGAGAACATTTATTCAACCAAACACCCGGCTGAGGCAACTTGGAGTCGCCAAGAAGTTCGGGGCATTGACTGATAACTTTGCTGGAAAGCGAATAGTGCTTATTGATGACTCAATTGTAAGAGGAAATACAATTTCTCCCATCATTAAATTGCTTAGAGAAGCTGGTGCAAAAGAGGTGCACATCCGTGTGGCTTCACCACCAATAAGATTTCCTTGTTACATGGGGATTAACATTCCAACCAAAGAAGAGCTTATTGCCAACAAACCTGAATTTCATGACATTGCAGGTTACATTGGAGCCACCAGCGTCATTTATCTTTCTGTTGACGGGCTGCTATCGGCTGTGCAGGGTGGCATCCCTTCAGCACATGACGAAAAGGACAACGTGATGATCAATAGTAACAGCTCGGGGAACCACAAAGCTAAGCAGAAAGTTGGTCACTGCACAGCTTGTCTCACTGGGAAATACCCTGTGGAACTGGAGTGGTGAACGGACATTACGAAACAAAGGCTAAAGGAGTCCTACGATTTCACACAGATAGCGGTTATATTTGAAAAGCCAAGAGAGCACAAAGGTCATGGCCactcatccatccatctttttttttgtagttgccGGTTTGCTCACCAAGCCCCaaatttaaattgtacttttcaCCCAATTAAAGTCTGTACTTGGTGACTAAGCTCACATCTTGTTTTGCAAAGGAAGGTTTACAATAATCCACATTATGATATTTTTATATGGAACTAGTGTATTTCATTAATCAATTTGTTAGagaaaaaatagtttattgaatgATAATATTTGTTAAGGACTAATCACACTAGGGTATATTCACGGTTGCCCTTCATTTGTTTTCCgcctgatttgtattttatgttgttgttttttaatgtgtggtAGTCCGGATATAATTGTCCTATGAGACCACACAATGTGTCTGTACCAGTACATTGAAACTAGTGTAGAATCACAGTACAAAAGGTTATTCTACAGGTTTCTGATAAGTGGCTTGCACTGCGGTACTTGTGTTAAGATCCAAAATGTTATCTTTTGTGATTTTAGGCCCAAacgtttaattttgtaaattacccatctgatttttttatttttatttcattgtatttccaAATAATAAAGCCAAAGGTCATGATACATGAGTTCACTAGTATCCTCTTGTCTTTTGTTATTGGCATCTTCATTCTGCAGTTTATTGCACTAGGTCCAGTACTGTCAACATGGGACCAGAACCTAGAGCAGATTGTGGACCAcaatttttcaaatttaaacctgattttgtttctttttgtagcCAATGGCACCATGCGTTTTCTGTATCATTTATACTGAAGTGTCATATATTCAGATAAAACAAACGCAATAAGTGTGCACAGAAGTGTGAAAGCCCTCATAGTTTAAAACCGCTATAGAAGAGGTGGAAAAAAGCAAGATACACCTTCActaaaagtaattaatattttcttagaGTATACTGAAGTAGATTCTTTATTCTTgacatttttttacaatgttaGAATCTTCTGATAGACTTTGTAAGGTGATTTTGATCAAAGTAGATTGTACTGATCATGTAAATCAATGCTGaaggattaaaatgtatttctcaatgtaatatttttgtagTATTGTAACATTGTTATTGAGTAGAAAACCTTTTATATTCTATGATTAAAAGGGGATAATATCcactatttgtattttgtgttactGATCCTAAATGCACAATATTGtattagagcagtggttctcaaactgtggtATGCGGAGTGCCCCCAGGTGGTACGCCTGACTACCTTGTAATATGTTGTGTGCATAgaaaaaattgtaattaaaataataataaaatctatgtaaattc

Function

GO:

id name namespace
GO:0009113 purine nucleobase biosynthetic process biological_process
GO:0009116 nucleoside metabolic process biological_process
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0004044 amidophosphoribosyltransferase activity molecular_function

KEGG:

id description
K00764 purF, PPAT; amidophosphoribosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113611 lncRNA downstream 74187 8603621 ~ 8605626 (-) True G91064
TU113539 lncRNA downstream 298143 8289765 ~ 8381670 (-) True G91016
TU113525 lncRNA downstream 392696 8286889 ~ 8287117 (-) True G91005
TU113512 lncRNA downstream 450252 8229315 ~ 8229561 (-) True G90992
TU113485 lncRNA downstream 514908 8164654 ~ 8164905 (-) True G90965
TU113678 lncRNA upstream 38401 8732760 ~ 8735232 (-) False AMCG00017531
TU113900 lncRNA upstream 900571 9594930 ~ 9595162 (-) True G91294
TU113903 lncRNA upstream 938286 9632645 ~ 9632859 (-) True G91297
TU113904 lncRNA upstream 968205 9662564 ~ 9662788 (-) True G91298
TU113906 lncRNA upstream 981187 9675546 ~ 9675779 (-) True G91300
AMCG00017529 mRNA downstream 2000 8663650 ~ 8677813 (-) True AMCG00017529
AMCG00017524 mRNA downstream 52627 8607059 ~ 8627186 (-) True AMCG00017524
AMCG00017520 mRNA downstream 165010 8473490 ~ 8514803 (-) False AMCG00017520
AMCG00017519 mRNA downstream 263334 8387062 ~ 8416479 (-) True AMCG00017519
AMCG00017516 mRNA downstream 329825 8329147 ~ 8349988 (-) True AMCG00017516
AMCG00017528 mRNA upstream 7519 8701878 ~ 8730713 (-) True AMCG00017528
AMCG00017531 mRNA upstream 39056 8733415 ~ 8748743 (-) True AMCG00017531
AMCG00017532 mRNA upstream 77850 8772209 ~ 8780221 (-) True AMCG00017532
AMCG00017536 mRNA upstream 95823 8790182 ~ 8798194 (-) True AMCG00017536
AMCG00017537 mRNA upstream 120691 8815050 ~ 8834367 (-) True AMCG00017537
TU113572 other downstream 164858 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 683218 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 847221 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 1566632 7112436 ~ 7113181 (-) True G90749
TU113210 other downstream 1765023 6888722 ~ 6914790 (-) False G90746
TU113686 other upstream 60929 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 1666941 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 5738799 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 7172588 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 7336043 16030402 ~ 16030905 (-) True G92129

Expression Profile