RNA id: AMCG00017531


Basic Information

Item Value
RNA id AMCG00017531
length 2112
RNA type mRNA
GC content 0.58
exon number 19
gene id AMCG00017531
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8732760 ~ 8748743 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCAGTGAAGAGAGCAGCGGGACTGACAGATGCACAGGAGCTGGACAGACAGAGAAGTGCCACGACAGGACACACAGTCTCCCAAGCTAGTTCGGGACggacagaaagaaagacagtctctgccctgtgtgtctctgaCAGGGTAGAGGATGGAGTTTGCCTGCAGTCATGTGGTGTGTAACTGGCAGCCAGAGCCCAGCATTCCAGTGCCAGGCTCCCCAGCTGCCCTGTGCCCACCAGTGCCCATGCGTGCCAGCTCTGCCAGGATGAATTCAACACAGACCCTTCCAGAGAGACCCAGGTCCAGTCACTACCATGACTACGACAACCGCATCTCCTGCATGTCACGCAGCAACCAGAACCGGCCAGCGGATATCCAAGTGACCCCTCCGCCCCTTCCCCCTCGGCTCGGAGACCGCAGCTCGAAGTCACAGAGATACCAGAGGCCCAACTCTTTGCCGCCAATTCCCAGCACCCCGCCTCCCCTGCCCCCACGTGGGTCCTGCAGCAACACTGAGAAACAGCTCAGTGCCAATGTGAATGTTGTGTCAGTGAATGTAGGCCGGCTGGTGGACATCACTAACACGGCAGCAGAGGAGAGGAGTAAGCGCCCGCTGTACTGCAAAAGCTGCCGCGCCGCCATGTCGGGTCTGAGCGTGCCCCGGCATCGGCAGCAGAGCATCATCTGGTGCTGTGAGTTCTGTGGGAAGGAGAACACAATCTCCCAGCCGAGCCCTCGCCTCCCCTTGGCCCGAGACATGCTGCACGTGAGTGAGGAGGCAGATGGAGACTACGTCAACTTGGAGGACATGCTGGTGGTGTTCTGTGTGGACATCTCAGGCAGCATGAGCGTCACGACAGAGGTGCCTGttgcaaacaatataaaaactcCAATGTACGTCTCCAGGCTCCAGAGTGTCCAGGACGCCCTCCATAGGTCGCTGTCCTTACTGCTGAAGACCTCCCCTCGCCGGCGGGTCGCCCTCGTCACCTTCAACGATGAGGTGACGGTGTACGGGGACGGGACGGGGGTCCCACTGACACTGAGGGATTGGGGGCTGCTCGACTTTGACTACCTGAAGGACCAGGGGGAGACCTTCACAACCCCTCACTGCATCGCCGAGAGCATCAAGGCACTGAACCAGAGAGTGCACGAACTACAGGAACATGGAGCCACAGCACTTGGCCCAGCAGCACTGGTCTCCATTGCAATGGCTTCTAGATATATGGGGTCAAAGGTGATAATCTGTACTGACGGACGAGCCAATATCGGCCTGGGGGACCTGGAGGACGAACCAACGCCCACCTCTCGCTACTTCTACACCCGCCTGGCAGAGGAGGCCGCAAATAAGGGGGTCATCGTCTCTGTGCTGACCTTTGAGGGCACCGACTGCAGACTGGTGGAGGTGGGCAGGCTGGCCGACCGCACTGGAGGGAGGGTGAACATAGTCAACACCAGCAGCGTGTTGTCTGAGATCCAATCCGTTCTAGAGGACGACATCATCGCCACCAGCGTCAAGGCCACCCTGCTGTCCACAGAGGGCGTGTTCTTCCCCCATGAAGAGAACTCAACACACAAGCTGGTGAGGGAGATCGGGAACGTGACTGAAGGCCTCGAGATCACCTTCGAGTTCGCTGTCCAGCCCTCCGCTGTGGACAGCTTCCTGCGGAGGGACAGAGTTCCCTTTCAGCTGCAGCTGGAGTTCAAGACGCGTGAGCTACAGAAAGTAACGCGCATCCTCAACGAGCAGAGAAGAGTCACCACCAGCAGCTGGGTGTGGGTGGGCAGTCTGAACATGGGCGTGCTGGAGGTGCACTGTGCCCAGCTGTGTGCCCGCCTCACCATGGAGGGAAGAGTCCTGGAGGCACAGAGACAGATTCATGCACAACAGGAGCTCCTGAAGGAAATCAGTCAGAAAGAGGAGTGCGTCTATGGCAACTGGATCAGCACCATGAGCCTGATCTGCCAGGATCTCACTGGGGACAGCAAGGTCAGGATGCTGTCCCAGCACACAAACTTGTCTGTTTTCTctaCCAACGTGGTGTACCAACTGAAGAGGGCAAAGAGCATCGTGCTGAGGAAATGCCATGTCCCCAGCCTGGCCATGTGA

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113611 lncRNA downstream 127789 8603621 ~ 8605626 (-) True G91064
TU113539 lncRNA downstream 351745 8289765 ~ 8381670 (-) True G91016
TU113525 lncRNA downstream 446298 8286889 ~ 8287117 (-) True G91005
TU113512 lncRNA downstream 503854 8229315 ~ 8229561 (-) True G90992
TU113485 lncRNA downstream 568510 8164654 ~ 8164905 (-) True G90965
TU113900 lncRNA upstream 846187 9594930 ~ 9595162 (-) True G91294
TU113903 lncRNA upstream 883902 9632645 ~ 9632859 (-) True G91297
TU113904 lncRNA upstream 913821 9662564 ~ 9662788 (-) True G91298
TU113906 lncRNA upstream 926803 9675546 ~ 9675779 (-) True G91300
TU113907 lncRNA upstream 928728 9677471 ~ 9680221 (-) True G91301
AMCG00017528 mRNA downstream 2702 8701878 ~ 8730713 (-) True AMCG00017528
AMCG00017530 mRNA downstream 39056 8679813 ~ 8694359 (-) True AMCG00017530
AMCG00017529 mRNA downstream 55602 8663650 ~ 8677813 (-) True AMCG00017529
AMCG00017524 mRNA downstream 106229 8607059 ~ 8627186 (-) True AMCG00017524
AMCG00017520 mRNA downstream 218612 8473490 ~ 8514803 (-) False AMCG00017520
AMCG00017532 mRNA upstream 23466 8772209 ~ 8780221 (-) True AMCG00017532
AMCG00017536 mRNA upstream 41439 8790182 ~ 8798194 (-) True AMCG00017536
AMCG00017537 mRNA upstream 66307 8815050 ~ 8834367 (-) True AMCG00017537
AMCG00017535 mRNA upstream 88110 8836853 ~ 8843458 (-) True AMCG00017535
AMCG00017539 mRNA upstream 221448 8970191 ~ 8972241 (-) True AMCG00017539
TU113572 other downstream 218460 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 736820 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 900823 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 1620234 7112436 ~ 7113181 (-) True G90749
TU113210 other downstream 1818625 6888722 ~ 6914790 (-) False G90746
TU113686 other upstream 6545 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 1612557 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 5684415 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 7118204 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 7281659 16030402 ~ 16030905 (-) True G92129

Expression Profile