RNA id: AMCG00017532


Basic Information

Item Value
RNA id AMCG00017532
length 1743
RNA type mRNA
GC content 0.58
exon number 7
gene id AMCG00017532
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8772209 ~ 8780221 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCCGGCTGTCCTGCTCCCTGGCTTTGCTGTGTCTCTATGGAGTGCTGCTCACAATGGGTGTCTGGGCCCAACCCTGCAACCTGACCCTGTCCTCTCTGGACCTGCACAGTGTCCTGCAGTGGGACTGTCCTGGCTTGCCCCCTAACACACGCTATACTGTGCAGACTATGAAAGTAAGTCAGGGGATGTGGCAAGACGTTGAGGGCTGTTCGAATGTCTCCACCTCTTTCTGTGACCTCTCTCCTGCCTTCTCCAAAACTGACCAGCTCTACTTCACACGGATCAGAGGAGTCTGGGCTGGAGGAGACACCGACTGGACTCAGAGTCCCTTGCAATTCCACCCTGAAAGAGAcaCGGCCCTCAGTCCGCCcatcctctctgtgtctgtgcagggaGAGGcggtgagtgtgagtgtgaccCTGCGCTGCTCACCGTACCAGAGAAAGCGACGCtcaaagtgtctcagtgtcccATCCGTCCTCTCCACAACGACCATCTCCATCAGTTTGTACAGAGATGAGCCATCACCTGTTGTACTAAAGCACCACACTGCGTCTCCATCGCTGGTACAGGTGAGCGACACAGTGCGGCTCACAGGGCAGCACAACCCAGAGCTGCCCCAGACAGCAACACTGCCAGCATGGTTGAAGCTGACAGCTGTGTTGTCTGCACTACTCCTGGCCGTATTCGTGGCAGCCGTCTTCCTCAAGATGAGATTACCAAAGGCACCCCTCCCCCGGCCACTGGAGATGTTGCATGAGGGGTTTCCTGGGGGGCTGTGTCCAGGGGTGGAAGGAGGGGAGGAGCAGTGGGACCGGCTGTCCATCCTCTCACTATCTATGTCCCACTGCAGCCCCACGCAGTGCCAGCTGGCCCCCGCCACCTTGACACACGAGAACCCCACTTACCACAGCAACGGCATCCCCCAGGACTCCAGGGACAGCGAGGGATACTGGGTAGGGGGGGGATCCCTGGGGGCTCCAGAGGAATCGTCTTGTGGGCCTGACTATTCCCCAACTCTGCCCCAATGCATGCTGGCCTTTTCCTCTGGCTTGTACAGCACAGCCGTGGCCTTTGAGACACCGTGCCCCTCCCAGACTGACGGCACAGTGGAGGCAGAGATGCCACAAGCAGCCTCACGTCCTCTCCTGTGTGGGGGAGGGGACCAGGACATACCACTACACACGGTGAGGCTGAGGGCTGGTGCAGAGGCAGATTGGCAGAGTAATGACTGGAGCCCTTTGGTCCAGCTCCCTCTGGGGCTGGGCAGTGGGGTTTGGCCAATGGTGAGGGACACTGAAGTTCAGGGGGCAGATGATAGGTCTCCCCTGTCCAAGATTGAGGACAGTGACCTGGGTGACCAAAAGGCATTTCCAACATCCCTGTTCTGTCACCAGATACTCTCTTCAGAGAAGGCGCTCTGCCACCCTGGACATACCCCAGATTCTCCTCCTATTTCCAGGAACTTGTATCATGCCTGTCCCCCCGAGGTCCCTCCACTGACATTCACCTGGACTGTACAAAACCGTGAGATTGAAGACAGTTCTGGATCCTTACCTGGGAATGCTGCTTGTGAGACGTGGCCCCCTCAAGGCACTCTCAGTCTGAACAGCCTGCTGCACTGGAGCCCAAACACAGGGGCCTCTGAGTCAATAGACTCGCCAGAGCACTGGAGCACAACGGACATGTACAGGGTAGACTcgggaggccaagtcaacacagATGAAGAGAAGCTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113678 lncRNA downstream 36977 8732760 ~ 8735232 (-) False AMCG00017531
TU113611 lncRNA downstream 166583 8603621 ~ 8605626 (-) True G91064
TU113539 lncRNA downstream 390539 8289765 ~ 8381670 (-) True G91016
TU113525 lncRNA downstream 485092 8286889 ~ 8287117 (-) True G91005
TU113512 lncRNA downstream 542648 8229315 ~ 8229561 (-) True G90992
TU113900 lncRNA upstream 814709 9594930 ~ 9595162 (-) True G91294
TU113903 lncRNA upstream 852424 9632645 ~ 9632859 (-) True G91297
TU113904 lncRNA upstream 882343 9662564 ~ 9662788 (-) True G91298
TU113906 lncRNA upstream 895325 9675546 ~ 9675779 (-) True G91300
TU113907 lncRNA upstream 897250 9677471 ~ 9680221 (-) True G91301
AMCG00017531 mRNA downstream 23466 8733415 ~ 8748743 (-) True AMCG00017531
AMCG00017528 mRNA downstream 41496 8701878 ~ 8730713 (-) True AMCG00017528
AMCG00017530 mRNA downstream 77850 8679813 ~ 8694359 (-) True AMCG00017530
AMCG00017529 mRNA downstream 94396 8663650 ~ 8677813 (-) True AMCG00017529
AMCG00017524 mRNA downstream 145023 8607059 ~ 8627186 (-) True AMCG00017524
AMCG00017536 mRNA upstream 9961 8790182 ~ 8798194 (-) True AMCG00017536
AMCG00017537 mRNA upstream 34829 8815050 ~ 8834367 (-) True AMCG00017537
AMCG00017535 mRNA upstream 56632 8836853 ~ 8843458 (-) True AMCG00017535
AMCG00017539 mRNA upstream 189970 8970191 ~ 8972241 (-) True AMCG00017539
AMCG00017540 mRNA upstream 193394 8973615 ~ 8976665 (-) True AMCG00017540
TU113686 other downstream 16302 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 257254 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 775614 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 939617 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 1659028 7112436 ~ 7113181 (-) True G90749
TU113928 other upstream 1581079 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 5652937 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 7086726 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 7250181 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 7250235 16030456 ~ 16030905 (-) False G92129

Expression Profile