RNA id: AMCG00017533


Basic Information

Item Value
RNA id AMCG00017533
length 3353
RNA type mRNA
GC content 0.42
exon number 6
gene id AMCG00017533
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8799335 ~ 8806468 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGGCTTTGGTGTGGCGCGGTGCTGTGGGTGGCTGGTGCGGAGGACGGGATGGTGCGGTCCGGCGTCTGTCGCCAGCTGTCAAACCGTCCGGGAGCGGAGGGGGAAGGAGCATCATGGCGTCCGAGCAGGAAAGCTCCAACGGTCCTGTGAAGAGGTCCATGCGAGAGAAGGCCATAGAGCGCAGGAGCATTAACAAGGAGCACAATAGTAACTTCAAGGCTGGCTATGTGCCCATCGAGGAGGAGAGGCTGCACAAGACTGGCCTGAGGGGCAGGAAAGGCAACCTGGCCATCTGCATCATCGTCGTCCTCTTCCTGTTGGCTCTCATCAACTTGATTATCACGCTCGTGATTTGGACAGTGATTCGCATCGGCCCCAACGGCTGTGACAGTATGGAGTTCCACGACAGCGGCCTACTGAGGTTTAAGCAGAAGTCTGACATGGGCGTGGTGCACCCCCTGCACAAGAGCACCGTGGGGGGCAGGAAGAACGAGAACCTCGTCATCACAGGGAACAACCAGCCGGTGGTTTTTCAGCAAGGAACCACTAAGCTGAGCGTGGAGAAAGAGAAGACCTCCATCACCAGTGATATCGGGATGACGTTTGTGGACCCTCGGACCCAGACGACGTTCTTCAGCACAGACTTCGACAACCATGAGTTCCACCTGCCCAAGGGGGTTAAGATACTCAACGTGCAGAAGGCCTCTACTGAGAGGATCACAAGCAATGCCTCCAGTGACCTCACCATTAAAGTCGACGGCAAAGCCATTATTCGTGGCAATGAAGGCGTGTTCATCATGGGAAAAACTGTCGAGTTTAGAATGGGAGGAGATATAGAGCTAAGGGCTgAGAACAGCATTATCCTGAACGGCTCCGTCATGGTCAGCCCATCTCGAATCCCCAACTCTTCCACCGGGGGGGAGCTGTTCTTTGACGAGGGCATGGAGCGCTACAAGCTCTGCATGTGTGCGGACGGGACTCTGTTCAGGGTTCAggtgaaaaacaagaacatggGCTGCCAGACCTCGGACAACCCATGTGGAGCGGCTCACTGAGGATCGGACGGACGCGCGCTATGAGCCGCTTCAGATGGCCCTGCCAGAGCAAATTAAGTCCCGCCTTCAAAGAGAACAAGTAGAATAAGACTTTCTCTAGTGCAGTGATTCCCATTTTCAACCTGGGAAGACTATTGACAGCCCAGGTTTTTGATCCATCCAATTTATAAAGGTTCATGCTCCAATCTTTATGGGAAATATGTACAGTGCATGTCTAGCATACTAAAAAACCTTTTGTCTTTCCATAATACTCTTTTATAACTTGGCAAATGAAGCCTGAGGGCTATCAGAAGGGCCCCAGGGAAACACTGCACTAGGGATGgcacacatttttatacatatattgtgttttatacCGATTTGCTTTTGTGCAACCAAAGACAtagggattttattttactgtactttttACAGGGCtttgaacatttgaaaaaatgcaTGCAGGATGTTTTTGTATGTCAAATATTACCAGAACAGTATTATGTTTTGAGTGacagatgtttcttgtaaaatatgtgtattaaaCAGATGCTGGCTCTTAGAAGACAGTCCTTAAAAGTGTCCAGTAATATCTGGTTATACTGTGGTGATCAGGGAGCAGAACCCCCTTATCAGCTTAGTTTTAAAAAATTATgttatttggtttaaaaatatgaaatgtcagCATTATCCTCTGATCCAGGGTTTCCCAAATCGGCCCTGGAGGAcaccctgtcctgctggtttttattccagctgagagctcaattgcttaattgaatccttaatttaactaacaatgcaatataaagctcaattatgtaattaagagcttgaTTGAAAccaaaatcagcagggcaggggttcctacaggaccggtttgggaatccctgctcTAATCAAACCGTTATGTTAATTCACATGACTTCACAGAAAGTGACAAATACCATTGAGTTTTACACAAaagtatatatactttttatagtatatgtttttttttttgtattcctgtcACATCTCAAAGATAGGTGACATGATtcatcagtattttatttaagttaatttattgaATAACTGTATAtcaaacagtgttttttttaaaggtctaGGAAACAAGTTTCATTGCCGTCCAGATTGTCAGTGCACTCCTCATTAGGTTTGATTAGTAGCGCTTGTACTGATATGCATCCCTGAGTGTCCTTCAGTTTGTTCTAGTGCCAAAAAGTATTAACTTAAAGACATTCAGTGAAACGTCCTCAAACGgtttattctttgtttgtttaatgttttggttgctgttgttttttaaacttacaAATTGCAGTACATACTTTACTGAATATGATCATATTTTATGATACTTATATTTTCAGTGGAAAAGGAACTTGCACTGACATTTGATGATACTAAAActgtaaattagttttaaacAGTGTTATGCTTATGCTGAAgcaaattcaaacaaaactcATGACAGATTTGATTAATTGTGCAATATAACCTTCATAGTGCTGTTTAATAAGCAAGGCTATTCatctctatatttattttgagtgtGTTTTCTAATGGCAATACCTGTAACTTTTTACATGGGAAttttcaaatgagaaaaaatcATCTTAGAATGTATTAATGATTATCCAAGagaatactgtttttaatattttttcatgaagTGAATTTGATTTCCTCTGAAGGTTGTTAATATGCATTAAAGGGGGGTCCAGTGGACTCTGACACTGCAGGCTGTGTCTGGAGAGGCGGGACACCCAGTGGCTTCTGACCGTCTTGTCCAGGAACCATGACGGAGAGAGTGTGGTGCTTGGACTGTCAATTGCCTTTCTCCAAATGTTGTGAAAAGGATCTATTGGGGATGTCCATCCATTATCATGGTGTAGCGCCACACAAATTGTATCTCAAATCATCACATGACGATACTAATGTTTGCTAAGTTTGCAATAATAAAGAACAGTGCTGTTTGAAATTTTAAAAAGGTGTATTTCTTTTCAGTTACTTGGTTTAATAAGATACAGATCCATACAATACAGACCTATGTAAAATAgcttaagatttttttttcttctttacaaaggtgtgtgatttaaaagaaagttaaaaGGGGAGCTCATGctgttaattttatattttcctccaccactaaaatttaaatattgtttatcaaACTATTATCTACTTCTAATTTAAGCATTCCTATTGTGCTTAAATTCAGCGGTTGCGGTGCAATATACTTTGTTCCCGTGCAATGTATTGCTGCACTTGCTTCACAAATTTTGTAAACTCTGGCTTGATATAAAAG

Function

GO: NA

KEGG:

id description
K12566 SGCB; beta-sarcoglycan

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113695 lncRNA upstream 15246 8783867 ~ 8784089 (+) True G91128
TU113664 lncRNA upstream 66703 8732368 ~ 8732632 (+) True G91104
TU113524 lncRNA upstream 512607 8286292 ~ 8286728 (+) True G91004
TU113511 lncRNA upstream 569759 8229315 ~ 8229576 (+) True G90991
TU113438 lncRNA upstream 809375 7989696 ~ 7989960 (+) True G90924
TU113705 lncRNA downstream 13245 8819713 ~ 8824837 (+) True G91135
TU113726 lncRNA downstream 32179 8838647 ~ 8841038 (+) True G91151
TU113913 lncRNA downstream 1360062 10166530 ~ 10166747 (+) True G91307
TU113916 lncRNA downstream 1490934 10297402 ~ 10297808 (+) True G91310
TU113936 lncRNA downstream 1761710 10568178 ~ 10568428 (+) True G91329
AMCG00017527 mRNA upstream 34432 8752365 ~ 8764903 (+) True AMCG00017527
AMCG00017526 mRNA upstream 98581 8688089 ~ 8700754 (+) True AMCG00017526
AMCG00017523 mRNA upstream 144993 8647446 ~ 8654342 (+) True AMCG00017523
AMCG00017521 mRNA upstream 197680 8591169 ~ 8601655 (+) True AMCG00017521
AMCG00017522 mRNA upstream 212664 8567667 ~ 8586671 (+) True AMCG00017522
AMCG00017534 mRNA downstream 547 8807015 ~ 8808994 (+) True AMCG00017534
AMCG00017538 mRNA downstream 62646 8869114 ~ 8969478 (+) True AMCG00017538
AMCG00017543 mRNA downstream 211411 9017879 ~ 9021042 (+) True AMCG00017543
AMCG00017544 mRNA downstream 280109 9086577 ~ 9103203 (+) True AMCG00017544
AMCG00017545 mRNA downstream 321295 9127763 ~ 9147339 (+) True AMCG00017545
TU113671 other upstream 45554 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 109929 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 666481 8132368 ~ 8132854 (+) True G90955
TU113388 other upstream 1105988 7692585 ~ 7693347 (+) True G90881
TU113384 other upstream 1127485 7668183 ~ 7671850 (+) True G90877
TU113887 other downstream 713305 9519773 ~ 9583280 (+) True G91281
TU114078 other downstream 3073146 11879614 ~ 11880499 (+) True G91452
TU114568 other downstream 5230408 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 6270857 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 6306142 15112610 ~ 15116031 (+) False AMCG00017650

Expression Profile