RNA id: AMCG00017536


Basic Information

Item Value
RNA id AMCG00017536
length 1425
RNA type mRNA
GC content 0.54
exon number 11
gene id AMCG00017536
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8790182 ~ 8798194 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGACACACTGAGGAGACTGGCGAGCACCGCTCCGTACTCTCTTCTGCAAGACAAACTTGAATCCTGGTACAAAGATTATCATCTCATCTCCTGTGACCAAAATTTGAACCGGTGCTGTGAGCTGGTGGAACTCACCTCAAAGATTCAGGGACAGCTATTCACCATCCTGAACCTCACTGCCAGAGAAGGCGGGCATTATGCGGGGGTTGAAACACTGAAATCTCGTCTCTTGCCGTGGCTGGGCTCTTGTTTCACTATGGCCTCTTCTGGAGTGACCTCGAATACCAGCCTTAATCTGATCCAGGAATcaatggagaaagaaaagaagataaGAGAGCTTTCTCAATCCCACgaacatgaaatacaaaagatGGAATCACAGCTGAATTCGACACGTTATCAGCTGGACTCTGTAAAGCAGGAATTGGAAGATGCTCAATTTGAACTTGATGATACCAAAAATAAGTCAGCAACGACACTACTAGCTACAGAGGATGAAATACTTCAGCTCAAAGCCGAGCTGCAAGCGGCGTGTGATCAGGCTGACCTGTACAAGCGGAAGGTAGATGTGCTGGATGACTACGAGAGACAGATCCGCATGCTGAAGGAAGAGAGCAAGGGTTTCCAGCTCAATTCCTTTGTGCTCTACCCTGTGTCTGCGTGCTCCAGGCTGACACGGAGCCGCTCCCCCAGCCCCTTGCCTCGCCGCAGCCGCTCCCCCAGCCCCCTGCTGAGGAGCGACTCCCCGACCCGAGCCCAGCTCACCAACTCCTCTCGGCACGCTCGCCTGGTCTCGCGTTTCAGTGACCTGTACACCACCGAGCGCCTGGAGGCCCAGAGCCTCCTCCGCCGCTACATAGAGGACCTGGAGATGGTGCAGAGGATCATATTCATCGCCACTGTGGAGTCCTTCCATGCTGCTAAGATGGCCTTCAGACAGTTCAAACTGCGAGTGAGGAagactctctctcccacacacatgGGCCCAGAGTCACTGGATGATGCTGTGGTGGACTACATTGTTAGAAATCTGGACCTCTATGACGTGCAGTCCAGTGTCAATGAGGTGATCAGCGCCATGAACGTGAATCCCAAGATCTCCTTCCCCCCAGAGATTGATTTCATCCTCATCGGCAGCTTCATCCGTGAAGTGTGTCGTGTGGCCTTTTCCATGCAGACCCTGGAGCCCCCCCTGGACCTGGCCTTCACCACAGATGGAGAGCTGTACAGCGACAGCAAGTATCGGCGCAGTTTTGACTCGGAGTACACGGCTCCGTTGGTGGCATACCACGTGTGGCCGACGCTGATGGAGGGAGACACTGTCATAGTAAAAGGAGAGGCCGTTACCAAGAGGGGAGCTCTAGGCTCCAGTCGCAGCCGCAGTCCCTCACCAGGCCGCCTGTCCCCCAGCCGTCTCTAA

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0035694 mitochondrial protein catabolic process biological_process
GO:0035695 mitophagy by induced vacuole formation biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG:

id description
K22257 SPATA18; mitochondria-eating protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113678 lncRNA downstream 54950 8732760 ~ 8735232 (-) False AMCG00017531
TU113611 lncRNA downstream 184556 8603621 ~ 8605626 (-) True G91064
TU113539 lncRNA downstream 408512 8289765 ~ 8381670 (-) True G91016
TU113525 lncRNA downstream 503065 8286889 ~ 8287117 (-) True G91005
TU113512 lncRNA downstream 560621 8229315 ~ 8229561 (-) True G90992
TU113900 lncRNA upstream 796736 9594930 ~ 9595162 (-) True G91294
TU113903 lncRNA upstream 834451 9632645 ~ 9632859 (-) True G91297
TU113904 lncRNA upstream 864370 9662564 ~ 9662788 (-) True G91298
TU113906 lncRNA upstream 877352 9675546 ~ 9675779 (-) True G91300
TU113907 lncRNA upstream 879277 9677471 ~ 9680221 (-) True G91301
AMCG00017532 mRNA downstream 9961 8772209 ~ 8780221 (-) True AMCG00017532
AMCG00017531 mRNA downstream 41439 8733415 ~ 8748743 (-) True AMCG00017531
AMCG00017528 mRNA downstream 59469 8701878 ~ 8730713 (-) True AMCG00017528
AMCG00017530 mRNA downstream 95823 8679813 ~ 8694359 (-) True AMCG00017530
AMCG00017529 mRNA downstream 112369 8663650 ~ 8677813 (-) True AMCG00017529
AMCG00017537 mRNA upstream 16856 8815050 ~ 8834367 (-) True AMCG00017537
AMCG00017535 mRNA upstream 38659 8836853 ~ 8843458 (-) True AMCG00017535
AMCG00017539 mRNA upstream 171997 8970191 ~ 8972241 (-) True AMCG00017539
AMCG00017540 mRNA upstream 175421 8973615 ~ 8976665 (-) True AMCG00017540
AMCG00017541 mRNA upstream 179044 8977238 ~ 9013172 (-) True AMCG00017541
TU113686 other downstream 34275 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 275227 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 793587 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 957590 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 1677001 7112436 ~ 7113181 (-) True G90749
TU113928 other upstream 1563106 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 5634964 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 7068753 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 7232208 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 7232262 16030456 ~ 16030905 (-) False G92129

Expression Profile