RNA id: AMCG00017539


Basic Information

Item Value
RNA id AMCG00017539
length 1638
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00017539
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8970191 ~ 8972241 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGGCTGAACACAATGGCTATGTACAACGATAAGTCAATGGACAACTACCTTTATTCTTCCTACAATCCCTACTCTTACAGATACCTCAATCCTAAACACAAGGGCGGAGGCTGGCGGCAGAAGAGTTACCTGTCCGGCTATGAGGACGCGGAGACGTACTTTGACAACCACCAAAGAGCGCAACTGAAGTCCATCTTGTCTCAGATTAACCCCAACCTGACGCCGAGGCTGCGGAAGGCCAACACCAAGGACGTGGGGATCCAGGTCAACCCTAAAACGGACGCCTCCGTGCAGTGCTCGCTGGGCCCCAGGACTCTCCTGGCGCGGAAACGAGAGGCTCTGCGGAGGAGGAGACAGGAGATCCAGGCCCCTGGGAGCCCCGTCAGCAATATCGCCAAGACGGTGCGCTTTCCGCGGACCCTAGCCCTATACTCTCCCATCGCCTCCAGGAGGCTGACCTCTTTCCTGGAGGAGGAGCCGGACGAAACGAAGTCCCCGGCAGAACCGCCAGGTACCTCCGAGGACGCAGGAGAAGCAGGCCGTGCCCAGGCCGCAGTGGAGGACCGGGCGGACACCGCGGCGGAGGAGAAGCCCAGCCCGGAGGCGGACGAGAGCAGCCGGGAAGCGCCGCCGGACGAAGCCGAGGTCCCTCCGAAAGACGCACCGGAGGCACCCAAGTCCAAAGCCCGAGTGAGGTTCCAGTTCTTGGAACAGAAGTACGGCTATTACCACTGCAGGGACTGCAATCTGCGATGGGAGAGCGCCTACGTCTGGTGTGTGCAGGGAACTAATAAAGTTTATTTCAAGCAATTCTGTAGAACGTGCCAGAAATCCTATAACCCGTACCGCGTGGAGGACATCACCTGCCAGACCTGCAAACAGTCCAGGTGCTCCTGTCCCACGACCATGCGCCACGTCGACCCCAAGAGGCCGCACCGGCAGGACCTGTGCGGGCGGTGCAAGGGCAAGCGCCTCTCCTGCGACAGCACTTTcagctttaaatacattatttaggtTACTTTCATGATGGTTCCTGCAGGACTTGGTTCACTGCTGTTTTCAGAAGACTAGTGCGATGCTGCATTTCTCTCCATTGCTTAAGCTGTATGAAGTTCAAGACTGTGTTGGTCAATGAATGgagactttatttttatttttttggtccaactttttttgaaaacataagtgtgggatttttgtttctttacatgGAAAGAAGTCGCAGGAActaaataaatggaaattggtgCATTTGGTTGGTTCATTTTTGCTTAGATCTCTAAACTGATTCTACTCTTCTCTTCAGTGAGAACTGGAGTATCTTAAGGACACTTGTCTGACGAGCTTCCACTGCGGATGGAGTTCTTTATTGCCACGGTCTACAAGGATCTGGGCCTGAGATGAGTGGTGTAAGGGGTGGCCCTCTAGGGTTTTAGTCTAACGCGAGGGGAGAAAACTCCCCCGCTTCCTACTCCTGATCATTTCCCGAGTGTATCGGCAAGTGCAGTCATGGGTGCGGTGAGTGATTCAGCAGCTAAATGCACATGGCAGCTGAATGATCTTATCTAGGTCATAGGAAGTCTCCTTGTCCTGTTCATTTAGGTGCTTTTGCTTCCCCAGTGCTGTACGTCTTGTC

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18762 ZAR1; zygote arrest protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113678 lncRNA downstream 234959 8732760 ~ 8735232 (-) False AMCG00017531
TU113611 lncRNA downstream 364565 8603621 ~ 8605626 (-) True G91064
TU113539 lncRNA downstream 588521 8289765 ~ 8381670 (-) True G91016
TU113525 lncRNA downstream 683074 8286889 ~ 8287117 (-) True G91005
TU113512 lncRNA downstream 740630 8229315 ~ 8229561 (-) True G90992
TU113900 lncRNA upstream 622689 9594930 ~ 9595162 (-) True G91294
TU113903 lncRNA upstream 660404 9632645 ~ 9632859 (-) True G91297
TU113904 lncRNA upstream 690323 9662564 ~ 9662788 (-) True G91298
TU113906 lncRNA upstream 703305 9675546 ~ 9675779 (-) True G91300
TU113907 lncRNA upstream 705230 9677471 ~ 9680221 (-) True G91301
AMCG00017535 mRNA downstream 126733 8836853 ~ 8843458 (-) True AMCG00017535
AMCG00017537 mRNA downstream 135824 8815050 ~ 8834367 (-) True AMCG00017537
AMCG00017536 mRNA downstream 171997 8790182 ~ 8798194 (-) True AMCG00017536
AMCG00017532 mRNA downstream 189970 8772209 ~ 8780221 (-) True AMCG00017532
AMCG00017531 mRNA downstream 221448 8733415 ~ 8748743 (-) True AMCG00017531
AMCG00017540 mRNA upstream 1374 8973615 ~ 8976665 (-) True AMCG00017540
AMCG00017541 mRNA upstream 4997 8977238 ~ 9013172 (-) True AMCG00017541
AMCG00017542 mRNA upstream 48892 9021133 ~ 9034005 (-) True AMCG00017542
AMCG00017546 mRNA upstream 178603 9150844 ~ 9156267 (-) True AMCG00017546
AMCG00017547 mRNA upstream 192620 9164861 ~ 9184746 (-) True AMCG00017547
TU113686 other downstream 214284 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 455236 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 973596 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 1137599 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 1857010 7112436 ~ 7113181 (-) True G90749
TU113928 other upstream 1389059 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 5460917 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 6894706 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 7058161 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 7058215 16030456 ~ 16030905 (-) False G92129

Expression Profile