RNA id: AMCG00017541


Basic Information

Item Value
RNA id AMCG00017541
length 7881
RNA type mRNA
GC content 0.44
exon number 8
gene id AMCG00017541
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8977238 ~ 9013172 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGACAATAAAGATGGCGTCGGCAGGATCCCTGTCTATGGATTACCGGAGAAGATGACGACGATGAAGCTGTTATCTCCGTCTGACACCAAAGTGTCCGCCGCGTACACCTTTAAATAACCACCCGAAAGGATCCCCGCATATACAGGGCGTATAACGAGACAGAGAACACACGACGACATCCAGAAATATCCAGCGACCCATGGAGGATATCAACTCCAACATTAACGCAGACTTGGAGGTGCGGAAGCTGCAAGACTTAGTGAAGAAGCTCGAAAGGCAGAATGAGCAGCTCCGGAGCCGGTCCACTCTGCTCACCTCGGTGTCGGCGAGTCCCAGACCACTCAGTGCGGGGTACGAGCAGCCCCAGCCAGCGGGAGCCACCGAAGGGCTGGCCGGGCTCCCTGGGGTGGGGTTCGGTGGGACAAGGGGCTTCGGGGTGCTGGAGCACGTCCGCTGTCTGAGCCCCAAACGCAGGCTGGAGAGCTCGGGCTATGGCAGCGTGTACGAGGCCGAGGAGGCATCCGTGGCCTCGCCCGCTGCCAGCTCGTTATTTGGGGCTGTGGAGGACTGTGTTGAGGAAGGGGAAACTTCTATTTTGGACGAAGTGGACCTCCTCGATCTGGAAGAGTTGGATTGCCTTGAACAAGAGGAGGACAGCTGGTTGTATGAAACGACCAAGAAGAGTTACAGTCCTTTGCAGAGAGCTGTCAGTCCCATAGCTTGGTGTAGACAAGTCCTGGATCATCCGTCTCCCGATATAGAATCTGCTAAGAAGTCTTTAATACAAAGGCTTGATCTGACCATGTCAGcGAAGAGGAGAAGTCTCTACAGCAGCCCTTACAACTCCACAGTTGGTTATGGCAGCCCATACAGCCCTAACGCAGGAAACAGTCCCTACAGCAGTGGCTTCaactccccctcctccaccccgGTGCGAGTGCCCATCGTCAAGCAGCTTGTGCTGCCGACCAGTTCAGGGCACTACAAAAGCTCCACAGAACGCAACCCTCCCATAAGTCCCCAGTCTTCAGTGGACAGTGAGCTGAGCACCTCTGAGATGGACGAGGACTCGGTGGGGTCAGGGTACAAACTCAACGACGTCACGGACGTGCAGATTCTAGCACGGATGCAGGAGGAGAGTCTGAGACAGGAGTATGCGGCTACCGCATCCAGACGCAGTTCGGGCTCTTCCTGTCACTCCCTCCGCCGGGGCACCTTCAGCGACCAGGAGCTGGACGCCCACAGCCTGGAGGACGATGAAGAGGCCGTTCACCCTGCATTCCACCCGCCCATCAACCGCTTCTCGCCCTCTCCCCGGCACTCCCCGCGCCCCTCGCCCCGCCACTCGCCCCGCAACTCCCCGCGCTCCCGCTCTCCGGCCCGCTCCCTGGAGTACAGCCGTGCCTCCCCTCAGCCAGTCATCAGCCGGCTGCAGCAGCCCCGTCTCTCCCTGCAGGGACATGCCCCCGACCTGCAGACCAGCGCTGTCAAGAACGAAGAAAAGCTCAGACGTAGTCTTCCAAACCTGTCTAGGGCAGCTGGTGTCCAGGCCGCAGAGCCTGTCAAAAACAGCAGAAGCTGCGACTCAAATCTTCAAGTGCCAAACGGAGGAGCGCCTCGGCTGCAGCAGCAATCGGCCATACCATCTCCCAGCAAACTGCGTCCCCCGGCAGCCCCTTCCCCACTGGCTCTCCGGCAGCCTATCAAGGCCATCCCCGGCCCTGGCTCGGTGACCGGGATCCCCATCCAGACCTCTGGCTCGCCCACTCCCGCCGCGGGCAGCACTACCCCCACCCGCACCCTGGGGGGGCGCAGCGGCCTCCCGCGCCCCAGCTCCTCTGCAGGAGGGGGGATACCAGTGCCTCGCAGCAAACTGGCACAGCCGGTCCGAAGATCATTGCAAGCTCCCAAGACCTATGGAGGTATGAAAGATGACAGCTGGAAAGAAGGCTGCTACTGATGTCCTCTCCACCCGGAGCCCTGAGCGCTATCTTCCACAGCCTTCCTCACCTGCGGCAGGCGCTCACATGCGACTTGTGAAATCTGAGGGGTGGCTGGGGGTCGAAACCCTGATCTCTGCCATTTAATCAGCACAATGTGGCAGAGGTTGCAATGCAGCACTTTACTgacattgacatttattttgttttaattctttcTCATGCAATCAGTTTTCATGGAAGTCTTGTCTGATCTGTGCTCCTGTGGAACTCGGCATGATGTTCCAGACAATTGAGGCCAATGTCTGGGCTGATCCCCGGTGAATGCCAAAGAAATAAGCTGACCACAAATAGCAGTAAACTACAAGAGCAAAGACTGTTCCTCTGATCCAGCACAGCACAACGGCATCTGACAAAACCATACAAGATTGTGTAAAGAGATCAGAATTGGTGTACTGTTCCATCACGCGCAGTGCAAGTGTCAACAAGGCAAGAGCTTAATATGCAATGTAAACAGTGTGTGGATCTTGAGTAACGAGAAAAGGAGCGAGCAAACACTTAATTTGTGCTTTCAAAGGTAAAGCCAACtgttatttcaaaaatatgtttgtaaagGTTTCAAATGACATATCATCTGAAAGCGGGGATGCCAAAGGGCTGAGTATTAATTTCGAAGATCTTTTTTCCTGCACTGTATGTTTTGGCTCAGGAACAAGTTGTCAGTGGTGTGCAGCCGACTTCTAAAACGCTTAAGAAACGggccagtgtgtctgtgtgcgttttCAGTGACGCCTCGTCCGCATCTGCTCCATTCAACACCGCCTCAGTGCTTTCAGCGTGGAACTGCGTTAAAACTATGCACTCATTTCATACTGGCACAACACACACGTGTGAAATTAAACCCTGCCTCTCGAACATCCCACAAGCAGGGAGGTATCAATATATGTATAACACATCTGCAGACAAACATCTGTAACTTCAGTGGAACATATCGAGGTACTGTAAATACCTGCATTAGCTGTGTGGTTTAGACGATTTGCCTTGTACAGCCACTTAagcatcataaaacaaaaaaaactttagtcTTGGCAGTGCCCCCATCCCATCATGCCTGTAAAGTGCCTGGGTTGATTAATTCAAtcgtctttattttatttgtgtgacaCCCTGTACATGCAGTGTGTAGATACGAGAGAGCAACTGTGCTTGGCTGTAGGAAGGGGGTTGCCTTGAAACCTTAGAAGTGAAGCGTGATGTTCAGAGCACTGCCTGGAGTAAAGCCATAGGATTGACCTGAGACGGGGGATGTTTGTTGTCGATGTAGGTTCCCCCACATGGCACGTTTTTGTCTGATAGCAAACAGCTGCCAAGAGTTAATTTTCACTTCTCGtacagtgctttaaaaatacaaaacaaagatgCTGTTTGCTTCTCAAATACCTCACCACAGGTAGATCTGAGATTGCTGTTATATTGGTTCTTGACCTTTCATCCTTTAAAAACCCTGAGGTTGAAGATCTAAATATACCTATGTATTGGCAGAGAACGGGTGATTTATCTAATTGGACTTCAGTTAATCTGCTCACTCACAGCTGTCAttttgcattctttcttttaggTACAATAAAGCCAGAGCTTGACGACATTGAGGGTTATTCTAGTTTATGAACTAGAATGtgttatttcaatttgtaagatatatttatttgaacttaTTTAAGAGATTTccatcaaattattttctattactAGAATCTGAATTATTCTATTATTTGGTCTGCAAAAATTACAATTTAGAGTATTTTTCCATGGTAAATTAATctagtgtatttattgttagTTGCACTGACCTGCTTTTGTCTTgggaaattaataaaacttgTTCACAGGAGTAAACCAGTACATCATGATTACAAAAAGCTGTTAATGCATACAGATAACTATAATGcatcaaaatatttcagtaattacttaatatttttgctttactGTATTTGCAAGCTCTATGAATAGTTGTGCTAGGGGGCATTTTTGCATTCTGGGGGGATAGGATGTTCAATATACTATTCATACAGCAGGAGTATCACTGACATCTTATCAAAATATGTTGCTGGTCAGAACTGCATACGCATAGatttttagaaatgaaaattGCCCAAATGCAAGAAATCTTCCTTTCAATTTCTAGTCCTATTCATACCACATGGTAAAACAACTGGAAAAACACGACCCATTGTGATAAAACTCATTAAGGTAAAAGTAGTCGTTCTTCAACCTTGCGACACCCTTGGTTTAGTAGCCGGTTTTGGAGTACAGGGCTTGTGAGTCACAATGTTATTGATGTATAGTCAAAGTGAGTCACAAATACCTGGTGTCGCAATGTGCACTGCAACCATTTCTACAGATTTCAACTGAATGAATGATCTTCGTTGCTAAGTCAGTCTGGGGTCTGTAAACATGAACACAGACTTTTGCTTTTTGACTGTTAAGCATTTTCAAAAGCTGCACGTTAAGATTTGATCGGAGGCAAGTAGGTTCCCTTTACTGTGGTACCATGTAAAATTGGAGAGCAATGAATACGTTTTTAAAAACtggcaacacatttattttctagtaTTCCTTTCCCCAAAGGAAGGGATCCATGTTCATGTTTCAGGTCCAAAGCTCTCAAGGAATTTCAGATGGGTGGTATGATATTGTTTTCGTGTACAATATTATGGTTGATTTTTCTTTGCTGCAAGAACATTTGCTCCCCATTTTCTGAAATTAATGGCAAACATTTAAAGGTGCAAATCTAGCAAGAGACAACAttggcaagaaaaaaaatgtaatgtgtattgATTTGGACTTGTGGAACAAATACTCATGACTTTTATGAAAGGGAATTATTCAAGTGGGAAGCTTCCATACACTGAGACTAAGTGAAATGGTTTTGTGGCTAGCTTTGCGTTTTCCTTTGTGTCATAATTATCATATTACGACTGGTTTGGAGAGAATTAATGCTGGATAACACATCTTCTGTGGGCTAGATGTTCATGCTCCCCAGGACTCCTCACTGTTAAACACATTATGCATAGGAGACTTTTTCACCATTCGGCAGGAAAGATGAGGAACATTAGAGTTTGATGCAACAACCACATATTCCAAGGTTAGCTGGGGGGGCTTTTCCTGTAATATAAAATTACTTCTTGTAGCGAAGCCTTTCCTAATTGGAATCCATAAAGTTGGAAAACTACAATATGCATCTGTAATAATATTCACCTCATTTGCACAAGAGATGCCATGAGCTTTAAATACAAGCTTCAGAAAACATCACTTGTGGGGTTGATTTACTGGAGCTGAATACTATTACAGTACAGATAGATTTCTAACATCGTACAGATATTTGAGCGTCTGTGCTCCCTGTGCTTTAAACTGTGATGTGTGTGTTAGACTCCGCTTATTAAACGGATACCATAAATGTTCAGCTTTTCCGGTGTAGCACATTTCTGTGGTGGAAGAGTGTGTGAGAAGGTGTGTGCGGGTTTCGATACAAAATCTAGTGCCTATGATTTACATGAGTTACACAGtgactttttcttttgaatgtgCTTGTTTTGTGCCAACAGCTCGgatttgccattttatttatgtaagcaGTCAGGTTTTACTTTGGTTTGAGTTTTTTCTTAATGTGTTTGTTagcattggtttgtttttttgcattcataAATGAATAATTGCTCTTGTAAGAAGACTGTAGAATATGCGCcttggtatttaaaaataaacgcTGAATCTGTAACAGTTACTTTATTTACACACGAAAGCAACAACTGCAAATGAAACGTTCTCATTGTGCTGGAGGTGTGGGCCACAAGAAGCTCAAGATATAAAGACCTACCATGAacctgtaattattttgtttacaaactTTTATATAGTCACCTACATTCATTTTTCCCATGTaaattcacatttcaaataaaaggaaagaaaggggTTTTTGCCTTTTAGTATTTCAAACACGTACTTTCTggtctttattttctgttgtgtaCCAAAACAGTTTCTTAGTTCTATAAGCTGGTCTGCCTGGTCTTTGCTGAAGGCTCTTTTCAGTAGTGGGGCATTTGGTcccattttaacacttttttttttccccccccaagCTTTTTCACCcatttgtgaaaatcaattGATCTCTCAACTAAATTTGCTATAATTTGACAGGATGTTTTGGTATCACATTATATTAACAAGCAACTAACAACTAATGAAAATGACAGTTCtagttacaaaatataaaagagtacatttaaaaatactataatgTGTGCACCTGTTAGCTGATTTAGTACATACTGTCCAACATCTAGTATTAGCAATTATGCTCTTTTACAAACATTGCAATACTATCCTTTCAAACTGCATGCACAAAACAATCTGAGACACAACATGTTAATAACTGATTACCACACACATTCTCCATGAAATAGAATGatcaatacatgtattaaagCCAGTCTGATGTATAATGTCCTTTCAGAAATGCATCTGGTTTCTAATTGGCTGCACCAGTGATGGGGGTGTTAAAACCACAAAGCAGACGATGGTGACACTTTTGCGAGTTCTCAAGTTCTTGCTCATAAACCACTATGGGGTTTTTATGCAACTTGACAGCCATGACTTTCAATGAGTAGGTCATAGATTTCCAATTCAAAATCTGTGCAATGATGTCTAACACTAATTgaatttgttcaaattaaaccacaatTATGAAAACCTCAATTACTTAAGAACAAGTTTACACAAAACTGCCCCCGTCCTGTAGCTTTGTGTCAAGAGATTTCCAGTTCTGTGTACATGCTGAAGCGGAGAATGTAAATCTTGTCCTTCCGCAGTGCGGTTGTATGCAGACAGTGATAAGAGATGAAAATGATCGTGTTTTCTTCATGAGGATTTGAATACAGACTAGTGTGTGAACACGTGTACACGACAACTTTGTTTTTCAACCAGGATGTCTCCTTGTTAAAAAGACTAAAAGTGCAGcccagcttttgaaaataaataaaaggaaaaactcaGGTCAGCGATCAGAGACTGTCTTGTTGCTAAATGCTTTGGGTATCAGCTGTATTAATGAGATGCTGTTACATGTAGTCTGATAACTCTTACCAAAACGAGTGATTTCATACACACTTGAATGTCTTTAATGGATGCCCTACAGCACAGAGATCCAAACACCATTTATTTGAATCAACACCAATAACGCACAAATCCAAGATAAATAACtctaaaactattattttgtaaaaagccctgttttattaaacactttGATTTCTGCAATGCATTAAAGAGTTGGACAAGCGGACCTACACCGAAGCTGCCACAAGGTGGCGCCAAGAACGCACCGTTTCTACAAGTTGTCCTCATCAAGATACACACATCATTGGCAGTGCGTGTAATTTGTGTTGTTGATGGTGTTTAGCGGCAGTGATTACAGGGGTTGGATGGCTTTACCCCCAATAATGACAGTCCTGCTTTGCTCAGTCCTCGGTACTGTGCCTCAGTAGAGACATCTTACTGTTCAGGTGTTGCGCACTTCTCAACATCAGGACGCACTGACGCAAGGAACCAGCCACTGCAGTGTCGCCATATCAGATCCCCTGCTATAGATCGAGCACACACCTGCCCAGATCAGCAGCAGTGCTCCCAGTGCTCCCAGTGCTCAAATACCGCACTGAAGGAGTTCAAGCATGGTGAACATACCATCAttacaatacactacactgGCATGTGTGTGAGCTCCATACATCTGTTTATAATAAACGAGCCCTTACCCATACCGtgcacatgtatttttatagtaAAAGTTTTCAAAGGCCTATGCTATTATAATGAATGCGTTTTTGAATGCTATTACAGcttttgttaaaattatatatatatatatat

Function

GO: NA

KEGG:

id description
K16580 SLAIN1_2; SLAIN motif-containing protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113678 lncRNA downstream 242006 8732760 ~ 8735232 (-) False AMCG00017531
TU113611 lncRNA downstream 371612 8603621 ~ 8605626 (-) True G91064
TU113539 lncRNA downstream 595568 8289765 ~ 8381670 (-) True G91016
TU113525 lncRNA downstream 690121 8286889 ~ 8287117 (-) True G91005
TU113512 lncRNA downstream 747677 8229315 ~ 8229561 (-) True G90992
TU113900 lncRNA upstream 581758 9594930 ~ 9595162 (-) True G91294
TU113903 lncRNA upstream 619473 9632645 ~ 9632859 (-) True G91297
TU113904 lncRNA upstream 649392 9662564 ~ 9662788 (-) True G91298
TU113906 lncRNA upstream 662374 9675546 ~ 9675779 (-) True G91300
TU113907 lncRNA upstream 664299 9677471 ~ 9680221 (-) True G91301
AMCG00017540 mRNA downstream 573 8973615 ~ 8976665 (-) True AMCG00017540
AMCG00017539 mRNA downstream 4997 8970191 ~ 8972241 (-) True AMCG00017539
AMCG00017535 mRNA downstream 133780 8836853 ~ 8843458 (-) True AMCG00017535
AMCG00017537 mRNA downstream 142871 8815050 ~ 8834367 (-) True AMCG00017537
AMCG00017536 mRNA downstream 179044 8790182 ~ 8798194 (-) True AMCG00017536
AMCG00017542 mRNA upstream 7961 9021133 ~ 9034005 (-) True AMCG00017542
AMCG00017546 mRNA upstream 137672 9150844 ~ 9156267 (-) True AMCG00017546
AMCG00017547 mRNA upstream 151689 9164861 ~ 9184746 (-) True AMCG00017547
AMCG00017549 mRNA upstream 215828 9229000 ~ 9231753 (-) True AMCG00017549
AMCG00017548 mRNA upstream 232044 9245216 ~ 9285503 (-) True AMCG00017548
TU113686 other downstream 221331 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 462283 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 980643 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 1144646 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 1864057 7112436 ~ 7113181 (-) True G90749
TU113928 other upstream 1348128 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 5419986 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 6853775 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 7017230 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 7017284 16030456 ~ 16030905 (-) False G92129

Expression Profile